Equivalence class NR_all_72076.11 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6FYY|1|2 (rep) | Small subunit ribosomal RNA | 18S ribosomal RNA | Kluyveromyces lactis | Eukarya | RF01960 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | Electron microscopy | 3.02 | 2018-12-05 |
| 2 | 6FYX|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Kluyveromyces lactis | Eukarya | RF01960 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | Electron microscopy | 3.5 | 2018-12-05 |
| 3 | 6UZ7|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Kluyveromyces lactis | Eukarya | RF01960 | K.lactis 80S ribosome with p/PE tRNA and eIF5B | Electron microscopy | 3.6 | 2020-01-15 |
| 4 | 3JAM|1|2 | Small subunit ribosomal RNA | 18S rRNA | Kluyveromyces lactis | Eukarya | RF01960 | CryoEM structure of 40S-eIF1A-eIF1 complex from yeast | Electron microscopy | 3.46 | 2015-08-12 |
| 5 | 3J80|1|2 | Small subunit ribosomal RNA | 18S rRNA | Kluyveromyces lactis | Eukarya | RF01960 | CryoEM structure of 40S-eIF1-eIF1A preinitiation complex | Electron microscopy | 3.75 | 2014-11-05 |
| 6 | 5IT7|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Kluyveromyces lactis | Eukarya | RF01960 | Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2 | Electron microscopy | 3.6 | 2016-05-18 |
| 7 | 3J81|1|2 | Small subunit ribosomal RNA | 18S rRNA | Kluyveromyces lactis | Eukarya | RF01960 | CryoEM structure of a partial yeast 48S preinitiation complex | Electron microscopy | 4 | 2014-11-05 |
| 8 | 8I7J|1|2 | Small subunit ribosomal RNA | RNA (1780-MER) | Kluyveromyces lactis NRRL Y-1140 | Eukarya | RF01960 | Yeast 40S-eIF4B - partially open conformation of the 40S head | Electron microscopy | 4.6 | 2024-02-07 |
| 9 | 5IT9|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Kluyveromyces lactis | Eukarya | RF01960 | Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. | Electron microscopy | 3.8 | 2016-05-18 |
| 10 | 6GSM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Kluyveromyces lactis | Eukarya | RF01960 | Structure of a partial yeast 48S preinitiation complex in open conformation | Electron microscopy | 5.15 | 2019-07-31 |
| 11 | 4V92|1|A2 | Small subunit ribosomal RNA | 18S RRNA | Kluyveromyces lactis | Eukarya | RF01960 | Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES | Electron microscopy | 3.7 | 2014-07-09 |
| 12 | 3JAP|1|2 | Small subunit ribosomal RNA | 18S rRNA | Kluyveromyces lactis | Eukarya | RF01960 | Structure of a partial yeast 48S preinitiation complex in closed conformation | Electron microscopy | 4.9 | 2015-08-12 |
| 13 | 6GSN|1|2 | Small subunit ribosomal RNA | 18S rRNA (1798-MER) | Kluyveromyces lactis | Eukarya | RF01960 | Structure of a partial yeast 48S preinitiation complex in closed conformation | Electron microscopy | 5.75 | 2019-06-26 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6FYY|1|2 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 1768 | |
| 2 | 6FYX|1|2 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 1768 | |
| 3 | 3JAP|1|2 | Structure of a partial yeast 48S preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 4.9 | 1780 | |
| 4 | 3J81|1|2 | CryoEM structure of a partial yeast 48S preinitiation complex | ELECTRON MICROSCOPY | 4 | 1780 | |
| 5 | 6GSN|1|2 | Structure of a partial yeast 48S preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 5.75 | 1798 | |
| 6 | 8I7J|1|2 | Yeast 40S-eIF4B - partially open conformation of the 40S head | ELECTRON MICROSCOPY | 4.6 | 1780 | |
| 7 | 3JAM|1|2 | CryoEM structure of 40S-eIF1A-eIF1 complex from yeast | ELECTRON MICROSCOPY | 3.46 | 1780 | |
| 8 | 3J80|1|2 | CryoEM structure of 40S-eIF1-eIF1A preinitiation complex | ELECTRON MICROSCOPY | 3.75 | 1779 | |
| 9 | 5IT7|1|2 | Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2 | ELECTRON MICROSCOPY | 3.6 | 1780 | |
| 10 | 5IT9|1|2 | Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. | ELECTRON MICROSCOPY | 3.8 | 1780 | |
| 11 | 4V92|1|A2 | Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES | ELECTRON MICROSCOPY | 3.7 | 1764 | |
| 12 | 6UZ7|1|2 | K.lactis 80S ribosome with p/PE tRNA and eIF5B | ELECTRON MICROSCOPY | 3.6 | 1780 | |
| 13 | 6GSM|1|2 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 5.15 | 1798 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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