Equivalence class NR_all_73428.32 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QI4|1|B (rep) | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome at 2.2 A resolution | Electron microscopy | 2.21 | 72 | 2022-07-13 |
| 2 | 7QI5|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution | Electron microscopy | 2.63 | 72 | 2023-07-05 |
| 3 | 8ANY|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA | Electron microscopy | 2.85 | 72 | 2023-08-16 |
| 4 | 8RRI|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with antibiotic tigecycline | Electron microscopy | 2.4 | 72 | 2025-03-12 |
| 5 | 7PO4|1|B | Transfer RNA | tRNAVal | Homo sapiens | Mitochondria | RF00005 | Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP) | Electron microscopy | 2.56 | 72 | 2022-06-15 |
| 6 | 9OLF|1|B | Transfer RNA | RNA (73-MER)mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Membrane-associated human mitoribosome in complex with TACO1 | Electron microscopy | 2.46 | 72 | 2026-02-18 |
| 7 | 7QI6|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution | Electron microscopy | 2.98 | 72 | 2023-05-17 |
| 8 | 8K2A|1|L2 | Transfer RNA | Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 55S mitoribosome with Tigecycline | Electron microscopy | 2.9 | 56 | 2024-07-10 |
| 9 | 9RU6|1|B | Transfer RNA | tRNA-Val (73-MER) | Homo sapiens | Mitochondria | RF00005 | Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs | Electron microscopy | 2.64 | 72 | 2026-07-15 |
| 10 | 9VXM|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs | Electron microscopy | 2.9 | 72 | 2026-07-22 |
| 11 | 7OF6|1|B | Transfer RNA | Mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | Electron microscopy | 2.6 | 56 | 2021-06-09 |
| 12 | 7OF4|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | Electron microscopy | 2.7 | 56 | 2021-06-09 |
| 13 | 7OF0|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | Electron microscopy | 2.2 | 56 | 2021-06-09 |
| 14 | 7OF2|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | Electron microscopy | 2.7 | 56 | 2021-06-02 |
| 15 | 7OF3|1|B | Transfer RNA | Mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | Electron microscopy | 2.7 | 56 | 2021-05-19 |
| 16 | 9PGF|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the P state | Electron microscopy | 2.93 | 72 | 2026-02-18 |
| 17 | 7OF7|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | Electron microscopy | 2.5 | 56 | 2021-06-23 |
| 18 | 9UWH|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | human mitoribosome trapped by retapamulin | Electron microscopy | 3 | 72 | 2025-10-29 |
| 19 | 9S7C|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1) | Electron microscopy | 3.2 | 72 | 2026-08-12 |
| 20 | 8XT0|1|L2 | Transfer RNA | Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline | Electron microscopy | 3.2 | 56 | 2024-07-10 |
| 21 | 9PGM|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells | Electron microscopy | 3.18 | 72 | 2026-02-18 |
| 22 | 8XT2|1|L2 | Transfer RNA | Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline | Electron microscopy | 3.3 | 56 | 2024-07-10 |
| 23 | 9PS7|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells | Electron microscopy | 3.08 | 72 | 2026-02-18 |
| 24 | 7L20|1|B | Transfer RNA | tRNAval | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | Electron microscopy | 3.15 | 56 | 2021-05-12 |
| 25 | 9PR4|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1 | Electron microscopy | 2.77 | 72 | 2026-02-18 |
| 26 | 6VMI|1|B | Transfer RNA | tRNAval | Homo sapiens | Mitochondria | RF00005 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 56 | 2020-08-05 |
| 27 | 9S7E|1|B | Transfer RNA | mitochondrial tRNA-Val | Homo sapiens | Mitochondria | RF00005 | Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC) | Electron microscopy | 3.1 | 72 | 2026-08-12 |
| 28 | 7OF5|1|B | Transfer RNA | Mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | Electron microscopy | 2.9 | 56 | 2021-06-09 |
| 29 | 9PRA|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu | Electron microscopy | 2.83 | 72 | 2026-02-18 |
| 30 | 6VLZ|1|B | Transfer RNA | tRNAval | Homo sapiens | Mitochondria | RF00005 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 56 | 2020-08-05 |
| 31 | 9PG8|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the P-E state | Electron microscopy | 3.06 | 72 | 2026-02-18 |
| 32 | 9PSI|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells | Electron microscopy | 3.12 | 72 | 2026-02-18 |
| 33 | 6ZSC|1|XB | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 59 | 2020-09-16 |
| 34 | 7OIA|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C | Electron microscopy | 3.2 | 56 | 2021-09-15 |
| 35 | 9PGI|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A-P-E state with TACO1 | Electron microscopy | 3.02 | 72 | 2026-02-18 |
| 36 | 6ZSD|1|XB | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | Electron microscopy | 3.7 | 59 | 2020-09-16 |
| 37 | 9PSM|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A/P-P/E state | Electron microscopy | 2.98 | 72 | 2026-02-18 |
| 38 | 8OIR|1|B9 | Transfer RNA | CP Val-tRNA(Val) | Homo sapiens | Mitochondria | RF00005 | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | Electron microscopy | 3.1 | 72 | 2023-06-14 |
| 39 | 8XT1|1|L2 | Transfer RNA | Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline | Electron microscopy | 3.1 | 56 | 2024-07-10 |
| 40 | 7ODS|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | State B of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 72 | 2021-06-23 |
| 41 | 7OI8|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A | Electron microscopy | 3.5 | 56 | 2021-09-15 |
| 42 | 7L08|1|B | Transfer RNA | tRNAVAL | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Electron microscopy | 3.49 | 56 | 2021-05-12 |
| 43 | 8XT3|1|L2 | Transfer RNA | Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline | Electron microscopy | 3.1 | 56 | 2024-07-10 |
| 44 | 9PGL|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A-P state with TACO1 | Electron microscopy | 2.9 | 72 | 2026-02-18 |
| 45 | 9PRX|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells | Electron microscopy | 3.23 | 72 | 2026-02-18 |
| 46 | 7OG4|1|XB | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with P/E-tRNA | Electron microscopy | 3.8 | 59 | 2021-06-23 |
| 47 | 9PRQ|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells | Electron microscopy | 3.34 | 72 | 2026-02-18 |
| 48 | 8OIT|1|B9 | Transfer RNA | CP Val-tRNA(Val) | Homo sapiens | Mitochondria | RF00005 | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 2.9 | 72 | 2023-06-14 |
| 49 | 6ZSG|1|XB | Transfer RNA | mt-tRNA Val | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | Electron microscopy | 4 | 59 | 2020-10-14 |
| 50 | 7OIB|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D | Electron microscopy | 3.3 | 56 | 2021-09-15 |
| 51 | 9S7D|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC) | Electron microscopy | 3.6 | 72 | 2026-08-12 |
| 52 | 7ODT|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | State C of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 72 | 2021-06-23 |
| 53 | 6ZS9|1|XB | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with ribosome recycling factor | Electron microscopy | 4 | 59 | 2020-10-14 |
| 54 | 6ZSA|1|XB | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | Electron microscopy | 4 | 59 | 2020-10-21 |
| 55 | 8QSJ|1|B | Transfer RNA | tRNA-Val | Homo sapiens | Mitochondria | RF00005 | Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7 | Electron microscopy | 3 | 72 | 2023-12-13 |
| 56 | 3J7Y|1|B | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the large ribosomal subunit from human mitochondria | Electron microscopy | 3.4 | 57 | 2014-10-15 |
| 57 | 9PRD|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the P state from TACO1-knockout cells | Electron microscopy | 3.31 | 72 | 2026-02-18 |
| 58 | 9S7B|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*) | Electron microscopy | 3.7 | 72 | 2026-08-12 |
| 59 | 5OOM|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.03 | 56 | 2017-09-13 |
| 60 | 9SL3|1|B | Transfer RNA | tRNA-Val (73-MER) | Homo sapiens | Mitochondria | RF00005 | Human mitoribosome bound to TACO1 (domain 1 ordered), mRNA, A/A-, P/P- and E/E-tRNAs | Electron microscopy | 4.05 | 72 | 2026-09-30 |
| 61 | 9CN3|1|B | Transfer RNA | tRNA | Homo sapiens | Mitochondria | RF00005 | Human 39S mitoribosome in complex with antibiotic Linezolid | Electron microscopy | 2.62 | 56 | 2025-04-23 |
| 62 | 6I9R|1|B | Transfer RNA | tRNA Val | Homo sapiens | Mitochondria | RF00005 | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | Electron microscopy | 3.9 | 60 | 2020-07-08 |
| 63 | 7QH6|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 | Electron microscopy | 3.08 | 56 | 2022-03-02 |
| 64 | 8PK0|1|B | Transfer RNA | CP tRNA-Val | Homo sapiens | Mitochondria | RF00005 | human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7 | Electron microscopy | 3.03 | 72 | 2023-12-13 |
| 65 | 5OOL|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.06 | 56 | 2017-09-13 |
| 66 | 7OID|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A | Electron microscopy | 3.7 | 56 | 2021-09-15 |
| 67 | 6ZSB|1|XB | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | Electron microscopy | 4.5 | 59 | 2020-09-16 |
| 68 | 7A5I|1|B3 | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | Electron microscopy | 3.7 | 56 | 2020-12-23 |
| 69 | 8QU1|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Eukarya | RF00005 | mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1 | Electron microscopy | 2.74 | 56 | 2024-06-26 |
| 70 | 7OIE|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B | Electron microscopy | 3.5 | 56 | 2021-09-15 |
| 71 | 6ZSE|1|XB | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | Electron microscopy | 5 | 59 | 2020-09-16 |
| 72 | 3J9M|1|B | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 56 | 2015-04-15 |
| 73 | 9PS0|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells | Electron microscopy | 3.29 | 72 | 2026-02-18 |
| 74 | 8K2B|1|L2 | Transfer RNA | Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of the human 39S mitoribosome with Tigecycline | Electron microscopy | 3.4 | 56 | 2024-07-10 |
| 75 | 7A5G|1|B3 | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | Electron microscopy | 4.33 | 56 | 2020-12-23 |
| 76 | 7OI9|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B | Electron microscopy | 3.3 | 56 | 2021-09-15 |
| 77 | 7A5F|1|B3 | Transfer RNA | mt-tRNA Val | Homo sapiens | Mitochondria | RF00005 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | Electron microscopy | 4.4 | 56 | 2020-12-23 |
| 78 | 7OI7|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 | Electron microscopy | 3.5 | 56 | 2021-09-15 |
| 79 | 8QU5|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Eukarya | RF00005 | mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2 | Electron microscopy | 2.42 | 56 | 2024-06-26 |
| 80 | 7OI6|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1 | Electron microscopy | 5.7 | 56 | 2021-10-13 |
| 81 | 6ZM6|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 72 | 2021-01-13 |
| 82 | 6ZM5|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 72 | 2021-01-13 |
| 83 | 7ODR|1|B | Transfer RNA | mitochondrial tRNAVal | Homo sapiens | Mitochondria | RF00005 | State A of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 2.9 | 72 | 2021-06-23 |
| 84 | 7O9K|1|B | Transfer RNA | MT-TRNAVAL | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | Electron microscopy | 3.1 | 60 | 2021-06-30 |
| 85 | 7O9M|1|B | Transfer RNA | MT-TRNAVAL | Homo sapiens | Mitochondria | RF00005 | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | Electron microscopy | 2.5 | 60 | 2021-06-30 |
| 86 | 7OIC|1|B | Transfer RNA | mitochondrial Val tRNA | Homo sapiens | Mitochondria | RF00005 | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4 | Electron microscopy | 3.1 | 56 | 2021-09-15 |
| 87 | 7A5J|1|B | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | Electron microscopy | 3.1 | 56 | 2020-12-23 |
| 88 | 7A5K|1|B3 | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | Electron microscopy | 3.7 | 56 | 2020-12-23 |
| 89 | 7A5H|1|B | Transfer RNA | mt-tRNAVal | Homo sapiens | Mitochondria | RF00005 | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | Electron microscopy | 3.3 | 56 | 2020-12-23 |
Release history
| Release | 4.59 |
|---|---|
| Date | 2026-09-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7O9K|1|B | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | ELECTRON MICROSCOPY | 3.1 | 60 | |
| 2 | 9S7C|1|B | Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1) | ELECTRON MICROSCOPY | 3.2 | 72 | |
| 3 | 9S7B|1|B | Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*) | ELECTRON MICROSCOPY | 3.7 | 72 | |
| 4 | 9S7D|1|B | Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC) | ELECTRON MICROSCOPY | 3.6 | 72 | |
| 5 | 9S7E|1|B | Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC) | ELECTRON MICROSCOPY | 3.1 | 72 | |
| 6 | 9PGI|1|B | In situ structure of the human mitoribosome in the A-P-E state with TACO1 | ELECTRON MICROSCOPY | 3.02 | 72 | |
| 7 | 9PR4|1|B | In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1 | ELECTRON MICROSCOPY | 2.77 | 72 | |
| 8 | 9PRA|1|B | In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu | ELECTRON MICROSCOPY | 2.83 | 72 | |
| 9 | 9PRX|1|B | In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.23 | 72 | |
| 10 | 9PSI|1|B | In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.12 | 72 | |
| 11 | 9PGM|1|B | In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.18 | 72 | |
| 12 | 9PS7|1|B | In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.08 | 72 | |
| 13 | 9PRQ|1|B | In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.34 | 72 | |
| 14 | 9PS0|1|B | In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.29 | 72 | |
| 15 | 9PRD|1|B | In situ structure of the human mitoribosome in the P state from TACO1-knockout cells | ELECTRON MICROSCOPY | 3.31 | 72 | |
| 16 | 9PSM|1|B | In situ structure of the human mitoribosome in the A/P-P/E state | ELECTRON MICROSCOPY | 2.98 | 72 | |
| 17 | 9OLF|1|B | Membrane-associated human mitoribosome in complex with TACO1 | ELECTRON MICROSCOPY | 2.46 | 72 | |
| 18 | 9PGL|1|B | In situ structure of the human mitoribosome in the A-P state with TACO1 | ELECTRON MICROSCOPY | 2.9 | 72 | |
| 19 | 9PG8|1|B | In situ structure of the human mitoribosome in the P-E state | ELECTRON MICROSCOPY | 3.06 | 72 | |
| 20 | 9PGF|1|B | In situ structure of the human mitoribosome in the P state | ELECTRON MICROSCOPY | 2.93 | 72 | |
| 21 | 9VXM|1|B | Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs | ELECTRON MICROSCOPY | 2.9 | 72 | |
| 22 | 9UWH|1|B | human mitoribosome trapped by retapamulin | ELECTRON MICROSCOPY | 3 | 72 | |
| 23 | 8OIT|1|B9 | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 2.9 | 72 | |
| 24 | 8OIR|1|B9 | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.1 | 72 | |
| 25 | 7QI6|1|B | Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution | ELECTRON MICROSCOPY | 2.98 | 72 | |
| 26 | 8ANY|1|B | Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA | ELECTRON MICROSCOPY | 2.85 | 72 | |
| 27 | 7QI5|1|B | Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution | ELECTRON MICROSCOPY | 2.63 | 72 | |
| 28 | 7QI4|1|B | Human mitochondrial ribosome at 2.2 A resolution | ELECTRON MICROSCOPY | 2.21 | 72 | |
| 29 | 9RU6|1|B | Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs | ELECTRON MICROSCOPY | 2.64 | 72 | |
| 30 | 9SL3|1|B | Human mitoribosome bound to TACO1 (domain 1 ordered), mRNA, A/A-, P/P- and E/E-tRNAs | ELECTRON MICROSCOPY | 4.05 | 72 | |
| 31 | 8RRI|1|B | Human mitochondrial ribosome in complex with antibiotic tigecycline | ELECTRON MICROSCOPY | 2.4 | 72 | |
| 32 | 7PO4|1|B | Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP) | ELECTRON MICROSCOPY | 2.56 | 72 | |
| 33 | 7ODR|1|B | State A of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 2.9 | 72 | |
| 34 | 6ZM5|1|B | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 72 | |
| 35 | 6ZM6|1|B | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 72 | |
| 36 | 7ODS|1|B | State B of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 | |
| 37 | 7ODT|1|B | State C of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 | |
| 38 | 8PK0|1|B | human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7 | ELECTRON MICROSCOPY | 3.03 | 72 | |
| 39 | 8QSJ|1|B | Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7 | ELECTRON MICROSCOPY | 3 | 72 | |
| 40 | 6ZSE|1|XB | Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA | ELECTRON MICROSCOPY | 5 | 59 | |
| 41 | 6ZSG|1|XB | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 59 | |
| 42 | 6ZSA|1|XB | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 59 | |
| 43 | 6ZSD|1|XB | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 59 | |
| 44 | 6ZS9|1|XB | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 59 | |
| 45 | 7OG4|1|XB | Human mitochondrial ribosome in complex with P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 59 | |
| 46 | 6ZSB|1|XB | Human mitochondrial ribosome in complex with mRNA and P-site tRNA | ELECTRON MICROSCOPY | 4.5 | 59 | |
| 47 | 6ZSC|1|XB | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 59 | |
| 48 | 6I9R|1|B | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | ELECTRON MICROSCOPY | 3.9 | 60 | |
| 49 | 6VMI|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 56 | |
| 50 | 6VLZ|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 56 | |
| 51 | 7L08|1|B | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 56 | |
| 52 | 7L20|1|B | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | ELECTRON MICROSCOPY | 3.15 | 56 | |
| 53 | 9CN3|1|B | Human 39S mitoribosome in complex with antibiotic Linezolid | ELECTRON MICROSCOPY | 2.62 | 56 | |
| 54 | 7OF5|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | ELECTRON MICROSCOPY | 2.9 | 56 | |
| 55 | 7OF2|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | ELECTRON MICROSCOPY | 2.7 | 56 | |
| 56 | 7OF6|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | ELECTRON MICROSCOPY | 2.6 | 56 | |
| 57 | 7OF4|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | ELECTRON MICROSCOPY | 2.7 | 56 | |
| 58 | 7OF3|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | ELECTRON MICROSCOPY | 2.7 | 56 | |
| 59 | 7OF0|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | ELECTRON MICROSCOPY | 2.2 | 56 | |
| 60 | 7OF7|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | ELECTRON MICROSCOPY | 2.5 | 56 | |
| 61 | 5OOL|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 56 | |
| 62 | 5OOM|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 56 | |
| 63 | 8QU5|1|B | mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2 | ELECTRON MICROSCOPY | 2.42 | 56 | |
| 64 | 8QU1|1|B | mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1 | ELECTRON MICROSCOPY | 2.74 | 56 | |
| 65 | 7OIA|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C | ELECTRON MICROSCOPY | 3.2 | 56 | |
| 66 | 7OI7|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 | ELECTRON MICROSCOPY | 3.5 | 56 | |
| 67 | 7OI9|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B | ELECTRON MICROSCOPY | 3.3 | 56 | |
| 68 | 7OIB|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D | ELECTRON MICROSCOPY | 3.3 | 56 | |
| 69 | 7OIE|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B | ELECTRON MICROSCOPY | 3.5 | 56 | |
| 70 | 7OID|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A | ELECTRON MICROSCOPY | 3.7 | 56 | |
| 71 | 7OI8|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A | ELECTRON MICROSCOPY | 3.5 | 56 | |
| 72 | 7A5J|1|B | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 56 | |
| 73 | 7A5H|1|B | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 56 | |
| 74 | 8XT3|1|L2 | Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline | ELECTRON MICROSCOPY | 3.1 | 56 | |
| 75 | 8XT1|1|L2 | Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline | ELECTRON MICROSCOPY | 3.1 | 56 | |
| 76 | 8K2B|1|L2 | Cryo-EM structure of the human 39S mitoribosome with Tigecycline | ELECTRON MICROSCOPY | 3.4 | 56 | |
| 77 | 8XT0|1|L2 | Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline | ELECTRON MICROSCOPY | 3.2 | 56 | |
| 78 | 8XT2|1|L2 | Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline | ELECTRON MICROSCOPY | 3.3 | 56 | |
| 79 | 8K2A|1|L2 | Cryo-EM structure of the human 55S mitoribosome with Tigecycline | ELECTRON MICROSCOPY | 2.9 | 56 | |
| 80 | 7A5I|1|B3 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 56 | |
| 81 | 7A5G|1|B3 | Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA | ELECTRON MICROSCOPY | 4.33 | 56 | |
| 82 | 7A5F|1|B3 | Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs | ELECTRON MICROSCOPY | 4.4 | 56 | |
| 83 | 7A5K|1|B3 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 56 | |
| 84 | 3J7Y|1|B | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 57 | |
| 85 | 3J9M|1|B | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 56 | |
| 86 | 7OIC|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4 | ELECTRON MICROSCOPY | 3.1 | 56 | |
| 87 | 7OI6|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1 | ELECTRON MICROSCOPY | 5.7 | 56 | |
| 88 | 7O9M|1|B | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | ELECTRON MICROSCOPY | 2.5 | 60 | |
| 89 | 7QH6|1|B | Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 | ELECTRON MICROSCOPY | 3.08 | 56 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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