RNA 3D Hub //

Equivalence class NR_all_74023.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16S0X|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
25NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
37NHL|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
47NHM|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
56YEF|1|aSmall subunit ribosomal RNA16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
66S13|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.582019-08-21
75ND8|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
85ND9|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
97KWG|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidineElectron microscopy3.752021-01-27
105LI0|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
115T7V|1|ASmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
125TCU|1|ASmall subunit ribosomal RNA16S RRNAStaphylococcus aureusBacteriaRF00177Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24
136FXC|1|BaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762018-03-21
146FXC|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762018-03-21

Release history

Release3.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.204
Date2021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_74023.6NR_all_74023.53.177(12) 5LI0|1|a, 5ND8|1|a, 5ND9|1|a, 5NGM|1|Aa, 5T7V|1|A, 5TCU|1|A, 6FXC|1|Aa, 6FXC|1|Ba, 6S0X|1|a, 6S13|1|a, 6YEF|1|a, 7KWG|1|a(2) 7NHL|1|a, 7NHM|1|a(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_74023.6NR_all_74023.73.205(14) 5LI0|1|a, 5ND8|1|a, 5ND9|1|a, 5NGM|1|Aa, 5T7V|1|A, 5TCU|1|A, 6FXC|1|Aa, 6FXC|1|Ba, 6S0X|1|a, 6S13|1|a, 6YEF|1|a, 7KWG|1|a, 7NHL|1|a, 7NHM|1|a(0) (2) 7ASO|1|X, 7ASP|1|X

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16S13|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.581539
26S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
36FXC|1|AaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
46FXC|1|BaThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.761539
55NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
65ND9|1|aHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.71541
77KWG|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidineELECTRON MICROSCOPY3.751552
87NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
97NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
105LI0|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.81547
115ND8|1|aHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.71542
126YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21540
135TCU|1|AMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.91464
145T7V|1|AMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.61419

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0257 s