NR_all_74924.27

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Showing 1 to 52 of 52 entries

#	IFE	Molecule	Organism	Title	Method	Res. Å	#NTs	Date
1	3PEY\|1\|B (rep)	RNA (5'-R(PUPUPUPUPUPU)-3')		S. cerevisiae Dbp5 bound to RNA and ADP BeF3	X-ray diffraction	1.4	6	2011-03-23
2	3PEW\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')		S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3	X-ray diffraction	1.5	6	2011-03-23
3	5ELX\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')	Saccharomyces cerevisiae	S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3	X-ray diffraction	1.81	6	2016-02-24
4	4ALP\|1\|E	HEXA URIDINE	synthetic construct	The Lin28b Cold shock domain in complex with hexauridine	X-ray diffraction	1.48	6	2012-09-05
5	2HYI\|1\|F	5'-R(UPUPUPUPUPU)-3'		Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-ray diffraction	2.3	6	2006-08-15
6	6G2K\|1\|R	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Structure of HuR RRM3 in complex with RNA (UUUUUU)	X-ray diffraction	2.01	6	2018-10-31
7	2HYI\|1\|L	5'-R(UPUPUPUPUPU)-3'		Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-ray diffraction	2.3	6	2006-08-15
8	3EX7\|1\|J	RNA (5'-R(UPUPUPUPUPU)-3')		The crystal structure of EJC in its transition state	X-ray diffraction	2.3	6	2008-12-09
9	5SZE\|1\|C	RNA (5'-R(PUPUP*U)-3')	unidentified	Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A	X-ray diffraction	1.5	3	2017-04-12
10	3EX7\|1\|F	RNA (5'-R(UPUPUPUPUPU)-3')		The crystal structure of EJC in its transition state	X-ray diffraction	2.3	6	2008-12-09
11	3O8C\|1\|C	RNA (5'-R(PUP(5BU)PUPUPUPU)-3')		Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-ray diffraction	2	6	2011-01-05
12	5BTE\|1\|D	RNA (5'-R(PUP(U37)P(U37)PUPUPU)-3')	Homo sapiens	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-ray diffraction	2.4	6	2015-07-22
13	3PF5\|1\|R	hexaribouracil (rU6)		Crystal structure of Bs-CspB in complex with rU6	X-ray diffraction	1.68	5	2011-09-21
14	5BTE\|1\|C	RNA (5'-R(PUP(U37)P(U37)PUPUPU)-3')	Homo sapiens	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-ray diffraction	2.4	6	2015-07-22
15	6WRE\|1\|D	RNA (5'-R(UP(U37)P(U37)PUP)-3')	Homo sapiens	Crystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ion	X-ray diffraction	2	5	2020-05-13
16	7SOW\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	LaM domain of human LARP1 in complex with UUUUUU	X-ray diffraction	1.3	4	2022-11-09
17	6I0U\|1\|B	RNA (5'-R(UPUPUPU)-3')	Drosophila melanogaster	Crystal structure of DmTailor in complex with U6 RNA	X-ray diffraction	2	4	2018-12-05
18	5ZSA\|1\|C	RNA (5'-R(PUPUPUPU)-3')	synthetic construct	Crystal structure of monkey TLR7 in complex with IMDQ and UUUUUU	X-ray diffraction	2.5	4	2019-01-30
19	5ZSA\|1\|D	RNA (5'-R(PUPUPUPU)-3')	synthetic construct	Crystal structure of monkey TLR7 in complex with IMDQ and UUUUUU	X-ray diffraction	2.5	4	2019-01-30
20	3O8R\|1\|C	RNA (5'-R(PUP(5BU)PUPUPUPU)-3')		Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-ray diffraction	2.3	6	2011-01-05
21	4NL3\|1\|Z	5'-R(UPUPUPUPUPU)-3'		Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-ray diffraction	3.1	6	2014-09-10
22	4Y91\|1\|O	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Crystal Structure of a Thermotoga maritima Hfq homolog	X-ray diffraction	2.66	6	2016-03-16
23	4Y91\|1\|N	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Crystal Structure of a Thermotoga maritima Hfq homolog	X-ray diffraction	2.66	6	2016-03-16
24	4NL3\|1\|R	5'-R(UPUPUPUPUPU)-3'		Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-ray diffraction	3.1	6	2014-09-10
25	1N34\|1\|Z	A-SITE MESSENGER RNA FRAGMENT	Thermus thermophilus	Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position	X-ray diffraction	3.8	4	2002-11-29
26	3PF5\|1\|S	hexaribouracil (rU6)		Crystal structure of Bs-CspB in complex with rU6	X-ray diffraction	1.68	1	2011-09-21
27	6PPN\|1\|A	Mimic of unprocessed U6 snRNA	synthetic construct	Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA	X-ray diffraction	1.91	5	2020-06-17
28	6PPN\|1\|I	Mimic of unprocessed U6 snRNA	synthetic construct	Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA	X-ray diffraction	1.91	5	2020-06-17
29	7DUH\|1\|Y	RNA (5'-R(UPUPUPUPUPU)-3')	Thermus thermophilus	Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound	X-ray diffraction	3.75	6	2022-01-26
30	7ZNJ\|1\|E	RNA	Homo sapiens	Structure of an ALYREF-exon junction complex hexamer	Electron microscopy	2.4	6	2023-04-12
31	7ZNJ\|1\|J	RNA	Homo sapiens	Structure of an ALYREF-exon junction complex hexamer	Electron microscopy	2.4	6	2023-04-12
32	7ZNJ\|1\|O	RNA	Homo sapiens	Structure of an ALYREF-exon junction complex hexamer	Electron microscopy	2.4	6	2023-04-12
33	7ZNJ\|1\|e	RNA	Homo sapiens	Structure of an ALYREF-exon junction complex hexamer	Electron microscopy	2.4	6	2023-04-12
34	7ZNJ\|1\|j	RNA	Homo sapiens	Structure of an ALYREF-exon junction complex hexamer	Electron microscopy	2.4	6	2023-04-12
35	7ZNJ\|1\|o	RNA	Homo sapiens	Structure of an ALYREF-exon junction complex hexamer	Electron microscopy	2.4	6	2023-04-12
36	8RDV\|1\|Y	Heterogenous mRNA	Psychrobacter urativorans	Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).	Electron microscopy	2.6	6	2024-02-21
37	6M7D\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Structure of ncleoprotein of sendai virus	Electron microscopy	2.9	6	2021-03-24
38	7EXA\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')	Escherichia coli	Structure of mumps virus nucleoprotein without C-arm	Electron microscopy	2.9	6	2024-08-21
39	7YPW\|1\|R	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Lloviu cuevavirus nucleoprotein-RNA complex	Electron microscopy	3.0356	6	2023-04-19
40	7F1M\|1\|R	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Marburg virus nucleoprotein-RNA complex	Electron microscopy	3.1	6	2022-03-09
41	7F1M\|1\|S	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Marburg virus nucleoprotein-RNA complex	Electron microscopy	3.1	6	2022-03-09
42	7YR8\|1\|R	RNA (5'-R(PUPUPUPUPUPU)-3')	synthetic construct	Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex	Electron microscopy	3.2	6	2023-04-19
43	9FIA\|1\|bV	ulr20	Toxoplasma gondii	SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.	Electron microscopy	3.29	6	2024-12-11
44	8VFT\|1\|w	mRNA	Oryctolagus cuniculus	Translating 80S rabbit ribosome stalled by emetine with eEF2	Electron microscopy	3.3	6	2024-12-25
45	8CBW\|1\|1	RNA (5'-R(PUPUPUPUPUPU)-3')	Escherichia coli BL21(DE3)	CryoEM structure of the Hendra henipavirus nucleocapsid sauronoid assembly monomer	Electron microscopy	3.485	6	2024-06-26
46	7EWQ\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')	Mumps orthorubulavirus	Structure of Mumps virus nucleocapsid ring	Electron microscopy	3.5	6	2021-06-23
47	7QDZ\|1\|E	RNA (5'-R(PUPUPUPUPUPU)-3')	Homo sapiens	80S-bound human SKI complex in the closed state	Electron microscopy	3.6	6	2022-02-09
48	5Z9W\|1\|R	RNA (6-MER)	synthetic construct	Ebola virus nucleoprotein-RNA complex	Electron microscopy	3.6	6	2018-10-24
49	7NSJ\|1\|AX	mRNA	Sus scrofa	55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)	Electron microscopy	3.9	6	2021-06-02
50	6JC3\|1\|N	polyU	Escherichia coli	The Cryo-EM structure of nucleoprotein-RNA complex of Newcastle disease virus	Electron microscopy	4.8	6	2019-08-07
51	7OZR\|1\|N	RNA (5'-R(PUPUPUPUPUPU)-3')	Mumps virus genotype A	Subtomogram average of authentic mumps virus nucleocapsid from HeLa cell lysate of long helical pitch	Electron microscopy	4.5	6	2023-03-01
52	8R08\|1\|Z1	oligo 1	Homo sapiens	Cryo-EM structure of the cross-exon pre-B+AMPPNP complex	Electron microscopy	6.1	5	2024-05-22

Release history

Release	3.367	3.368	3.369	3.370	3.371	3.372	3.373	3.374	3.375	3.376	3.377
Date	2024-12-25	2025-01-01	2025-01-08	2025-01-15	2025-01-22	2025-01-29	2025-02-05	2025-02-12	2025-02-19	2025-02-26	2025-03-05

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

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Showing 1 to 52 of 52 entries

#S	PDB	Title	Method	Resolution	#NTs
1	5SZE\|1\|C	Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A	X-RAY DIFFRACTION	1.5	3
2	3PF5\|1\|S	Crystal structure of Bs-CspB in complex with rU6	X-RAY DIFFRACTION	1.68	1
3	3O8C\|1\|C	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-RAY DIFFRACTION	2	6
4	3PF5\|1\|R	Crystal structure of Bs-CspB in complex with rU6	X-RAY DIFFRACTION	1.68	5
5	5BTE\|1\|D	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-RAY DIFFRACTION	2.4	6
6	5BTE\|1\|C	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-RAY DIFFRACTION	2.4	6
7	7DUH\|1\|Y	Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound	X-RAY DIFFRACTION	3.75	6
8	1N34\|1\|Z	Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position	X-RAY DIFFRACTION	3.8	4
9	7ZNJ\|1\|E	Structure of an ALYREF-exon junction complex hexamer	ELECTRON MICROSCOPY	2.4	6
10	7ZNJ\|1\|o	Structure of an ALYREF-exon junction complex hexamer	ELECTRON MICROSCOPY	2.4	6
11	7ZNJ\|1\|J	Structure of an ALYREF-exon junction complex hexamer	ELECTRON MICROSCOPY	2.4	6
12	7ZNJ\|1\|e	Structure of an ALYREF-exon junction complex hexamer	ELECTRON MICROSCOPY	2.4	6
13	7ZNJ\|1\|j	Structure of an ALYREF-exon junction complex hexamer	ELECTRON MICROSCOPY	2.4	6
14	7ZNJ\|1\|O	Structure of an ALYREF-exon junction complex hexamer	ELECTRON MICROSCOPY	2.4	6
15	2HYI\|1\|L	Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-RAY DIFFRACTION	2.3	6
16	2HYI\|1\|F	Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-RAY DIFFRACTION	2.3	6
17	3EX7\|1\|J	The crystal structure of EJC in its transition state	X-RAY DIFFRACTION	2.3	6
18	3EX7\|1\|F	The crystal structure of EJC in its transition state	X-RAY DIFFRACTION	2.3	6
19	3PEY\|1\|B	S. cerevisiae Dbp5 bound to RNA and ADP BeF3	X-RAY DIFFRACTION	1.4	6
20	5ELX\|1\|B	S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3	X-RAY DIFFRACTION	1.81	6
21	3PEW\|1\|B	S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3	X-RAY DIFFRACTION	1.5	6
22	9FIA\|1\|bV	SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.	ELECTRON MICROSCOPY	3.29	6
23	3O8R\|1\|C	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-RAY DIFFRACTION	2.3	6
24	6WRE\|1\|D	Crystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ion	X-RAY DIFFRACTION	2	5
25	7QDZ\|1\|E	80S-bound human SKI complex in the closed state	ELECTRON MICROSCOPY	3.6	6
26	5Z9W\|1\|R	Ebola virus nucleoprotein-RNA complex	ELECTRON MICROSCOPY	3.6	6
27	7YPW\|1\|R	Lloviu cuevavirus nucleoprotein-RNA complex	ELECTRON MICROSCOPY	3.0356	6
28	7OZR\|1\|N	Subtomogram average of authentic mumps virus nucleocapsid from HeLa cell lysate of long helical pitch	ELECTRON MICROSCOPY	4.5	6
29	7F1M\|1\|S	Marburg virus nucleoprotein-RNA complex	ELECTRON MICROSCOPY	3.1	6
30	7YR8\|1\|R	Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex	ELECTRON MICROSCOPY	3.2	6
31	7F1M\|1\|R	Marburg virus nucleoprotein-RNA complex	ELECTRON MICROSCOPY	3.1	6
32	6M7D\|1\|B	Structure of ncleoprotein of sendai virus	ELECTRON MICROSCOPY	2.9	6
33	7EXA\|1\|B	Structure of mumps virus nucleoprotein without C-arm	ELECTRON MICROSCOPY	2.9	6
34	7EWQ\|1\|B	Structure of Mumps virus nucleocapsid ring	ELECTRON MICROSCOPY	3.5	6
35	8CBW\|1\|1	CryoEM structure of the Hendra henipavirus nucleocapsid sauronoid assembly monomer	ELECTRON MICROSCOPY	3.485	6
36	6JC3\|1\|N	The Cryo-EM structure of nucleoprotein-RNA complex of Newcastle disease virus	ELECTRON MICROSCOPY	4.8	6
37	8RDV\|1\|Y	Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).	ELECTRON MICROSCOPY	2.6	6
38	8VFT\|1\|w	Translating 80S rabbit ribosome stalled by emetine with eEF2	ELECTRON MICROSCOPY	3.3	6
39	7NSJ\|1\|AX	55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)	ELECTRON MICROSCOPY	3.9	6
40	6G2K\|1\|R	Structure of HuR RRM3 in complex with RNA (UUUUUU)	X-RAY DIFFRACTION	2.01	6
41	5ZSA\|1\|C	Crystal structure of monkey TLR7 in complex with IMDQ and UUUUUU	X-RAY DIFFRACTION	2.5	4
42	5ZSA\|1\|D	Crystal structure of monkey TLR7 in complex with IMDQ and UUUUUU	X-RAY DIFFRACTION	2.5	4
43	4ALP\|1\|E	The Lin28b Cold shock domain in complex with hexauridine	X-RAY DIFFRACTION	1.48	6
44	6PPN\|1\|I	Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA	X-RAY DIFFRACTION	1.91	5
45	6PPN\|1\|A	Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA	X-RAY DIFFRACTION	1.91	5
46	4NL3\|1\|Z	Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-RAY DIFFRACTION	3.1	6
47	4NL3\|1\|R	Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-RAY DIFFRACTION	3.1	6
48	4Y91\|1\|O	Crystal Structure of a Thermotoga maritima Hfq homolog	X-RAY DIFFRACTION	2.66	6
49	4Y91\|1\|N	Crystal Structure of a Thermotoga maritima Hfq homolog	X-RAY DIFFRACTION	2.66	6
50	6I0U\|1\|B	Crystal structure of DmTailor in complex with U6 RNA	X-RAY DIFFRACTION	2	4
51	8R08\|1\|Z1	Cryo-EM structure of the cross-exon pre-B+AMPPNP complex	ELECTRON MICROSCOPY	6.1	5
52	7SOW\|1\|B	LaM domain of human LARP1 in complex with UUUUUU	X-RAY DIFFRACTION	1.3	4

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

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