RNA 3D Hub //

Equivalence class NR_all_76090.10 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18FR8|1|A (rep)Large subunit ribosomal RNA23S rRNA (3119-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.7631192023-05-17
28VR4|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryElectron microscopy2.831182025-02-19
38WHX|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.830202024-02-28
48WHY|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.Electron microscopy2.730172024-02-28
58WI8|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.Electron microscopy2.730252024-02-28
67S0S|1|CLarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatisBacteriaRF02541M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitElectron microscopy3.0531192022-03-30
78V9L|1|ALarge subunit ribosomal RNA23S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy330732024-02-07
88V9K|1|ALarge subunit ribosomal RNA23S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.130812024-02-07
98V9J|1|ALarge subunit ribosomal RNA23S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.130732024-02-07
108VK0|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AElectron microscopy3.1431192025-02-19
115O60|1|ALarge subunit ribosomal RNA23S rRNA, tRNA CCA-end acetylated (Phe)Mycolicibacterium smegmatisBacteriaRF02541Structure of the 50S large ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.1831192017-07-12
128VIO|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis HflX bound to a 70S ribosomeElectron microscopy3.2631192025-02-19
138VK7|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BElectron microscopy3.0929502025-02-19
148KAB|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Mycobacterium smegmatis 50S ribosomal subunit-HflX complexElectron microscopy3.331112024-07-31
158VRL|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmElectron microscopy3.3331192025-02-19
165O61|1|ALarge subunit ribosomal RNA23S rRNAMycobacterium smegmatisBacteriaRF02541The complete structure of the Mycobacterium smegmatis 70S ribosomeElectron microscopy3.3131192017-07-12
178VKI|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CElectron microscopy2.9629522025-02-19
185ZET|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatisBacteriaRF02541M. smegmatis P/P state 50S ribosomal subunitElectron microscopy3.231022018-09-26
198VKW|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXElectron microscopy3.4430432025-02-19
207XAM|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthElectron microscopy3.530622023-05-03
216DZP|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatisBacteriaRF02541Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitElectron microscopy3.4231192018-10-03
228WI7|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.530252024-02-28
238WIB|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.530222024-02-28
246DZI|1|ALarge subunit ribosomal RNA23 S rRNA (3119-MER)Mycolicibacterium smegmatisBacteriaRF02541Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.4631192018-09-26
258VR8|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmElectron microscopy3.2529502025-02-19
265ZEB|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatisBacteriaRF02541M. Smegmatis P/P state 70S ribosome structureElectron microscopy3.431022018-09-26
275XYM|1|ALarge subunit ribosomal RNA23S RNAMycolicibacterium smegmatisBacteriaRF02541Large subunit of Mycobacterium smegmatisElectron microscopy3.0826652017-09-27
285ZEP|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatisBacteriaRF02541M. smegmatis hibernating state 70S ribosome structureElectron microscopy3.431022018-09-26
298XZ3|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Mycobacterium smegmatis 50S ribosomal subunit with ErythromycinElectron microscopy3.631192024-07-31
308WIC|1|ALarge subunit ribosomal RNA23S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.530222024-02-28
317Y41|1|ALarge subunit ribosomal RNA23S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF02541Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growthElectron microscopy4.131192023-05-03

Release history

Release3.3753.3763.377
Date2025-02-192025-02-262025-03-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18FR8|1|AStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.763119
28WHX|1|ACryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.83020
38WHY|1|ACryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.73017
48WIB|1|ACryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.53022
58WIC|1|ACryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.53022
68WI8|1|ACryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY2.73025
78WI7|1|ACryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.53025
85ZEP|1|AM. smegmatis hibernating state 70S ribosome structureELECTRON MICROSCOPY3.43102
95ZET|1|AM. smegmatis P/P state 50S ribosomal subunitELECTRON MICROSCOPY3.23102
105ZEB|1|AM. Smegmatis P/P state 70S ribosome structureELECTRON MICROSCOPY3.43102
115O60|1|AStructure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.183119
125O61|1|AThe complete structure of the Mycobacterium smegmatis 70S ribosomeELECTRON MICROSCOPY3.313119
136DZI|1|ACryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.463119
146DZP|1|ACryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.423119
158V9K|1|ACryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.13081
168V9J|1|ACryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.13073
178V9L|1|ACryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY33073
188VIO|1|AStructure of Mycobacterium smegmatis HflX bound to a 70S ribosomeELECTRON MICROSCOPY3.263119
195XYM|1|ALarge subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.082665
208XZ3|1|AMycobacterium smegmatis 50S ribosomal subunit with ErythromycinELECTRON MICROSCOPY3.63119
217S0S|1|CM. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.053119
227Y41|1|AMycobacterium smegmatis 50S ribosomal subunit from Log Phase of growthELECTRON MICROSCOPY4.13119
238VRL|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmELECTRON MICROSCOPY3.333119
248VK0|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AELECTRON MICROSCOPY3.143119
258VKW|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXELECTRON MICROSCOPY3.443043
268VR4|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryELECTRON MICROSCOPY2.83118
278KAB|1|AMycobacterium smegmatis 50S ribosomal subunit-HflX complexELECTRON MICROSCOPY3.33111
288VR8|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmELECTRON MICROSCOPY3.252950
298VK7|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BELECTRON MICROSCOPY3.092950
308VKI|1|AStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CELECTRON MICROSCOPY2.962952
317XAM|1|AMycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthELECTRON MICROSCOPY3.53062

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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