NR_all_76251.2

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Showing 1 to 35 of 35 entries

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8P8B\|1\|4 (rep)	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells	Electron microscopy	2.9	108	2024-11-20
2	8P7X\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells	Electron microscopy	3.03	108	2024-11-20
3	7P6Z\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 70S ribosome in untreated cells	Electron microscopy	3.5	105	2022-05-25
4	7OOD\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells	Electron microscopy	3.4	105	2022-05-25
5	8P7Y\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit	Electron microscopy	3.7	108	2024-11-20
6	7PIB\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	4.7	105	2022-05-25
7	7PAL\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	4.7	105	2022-05-25
8	7PHB\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	4.9	105	2022-05-25
9	7PAK\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	5.3	105	2022-05-25
10	7PIT\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	5.7	105	2022-05-25
11	7PI9\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	6.3	105	2022-05-25
12	7PAI\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	6.7	105	2022-05-25
13	7PAM\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	6.8	105	2022-05-25
14	7PAO\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	7	105	2022-05-25
15	7PAJ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	7.3	105	2022-05-25
16	7PAR\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	8.2	105	2022-05-25
17	7PHA\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	8.5	105	2022-05-25
18	8P8W\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)	Electron microscopy	8.7	108	2024-11-20
19	8P8V\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)	Electron microscopy	8.7	108	2024-11-20
20	7PAU\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells	Electron microscopy	8.3	105	2022-05-25
21	7PH9\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	8.7	105	2022-05-25
22	7PI8\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	8.9	105	2022-05-25
23	7PAQ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	8.9	105	2022-05-25
24	7PIC\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.1	105	2022-05-25
25	7PIP\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.3	105	2022-05-25
26	7PAH\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	9.5	105	2022-05-25
27	7PIO\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.5	105	2022-05-25
28	7PAT\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	free 50S in untreated Mycoplasma pneumoniae cells	Electron microscopy	9.2	105	2022-05-25
29	7PIQ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.7	105	2022-05-25
30	7PAN\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	9.7	105	2022-05-25
31	7PHC\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	9.9	105	2022-05-25
32	7PIR\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	12.1	105	2022-05-25
33	7PIA\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	13.6	105	2022-05-25
34	7PIS\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	15	105	2022-05-25
35	7PAS\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	16	105	2022-05-25

Release history

Release	3.362	3.363	3.364	3.365	3.366	3.367	3.368	3.369	3.370	3.371	3.372	3.373	3.374	3.375	3.376	3.377
Date	2024-11-20	2024-11-27	2024-12-04	2024-12-11	2024-12-18	2024-12-25	2025-01-01	2025-01-08	2025-01-15	2025-01-22	2025-01-29	2025-02-05	2025-02-12	2025-02-19	2025-02-26	2025-03-05

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

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Showing 1 to 35 of 35 entries

#S	PDB	Title	Method	Resolution	#NTs
1	7PIC\|1\|4	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.1	105
2	7PHC\|1\|4	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.9	105
3	7PIO\|1\|4	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.5	105
4	7PAN\|1\|4	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.7	105
5	7PAQ\|1\|4	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.9	105
6	7PIB\|1\|4	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.7	105
7	7PIT\|1\|4	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	5.7	105
8	7PAK\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	5.3	105
9	7PHB\|1\|4	70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.9	105
10	8P7Y\|1\|4	Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit	ELECTRON MICROSCOPY	3.7	108
11	8P7X\|1\|4	Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.03	108
12	8P8B\|1\|4	Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells	ELECTRON MICROSCOPY	2.9	108
13	8P8W\|1\|4	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)	ELECTRON MICROSCOPY	8.7	108
14	8P8V\|1\|4	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)	ELECTRON MICROSCOPY	8.7	108
15	7PAL\|1\|4	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.7	105
16	7OOD\|1\|4	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.4	105
17	7P6Z\|1\|4	Mycoplasma pneumoniae 70S ribosome in untreated cells	ELECTRON MICROSCOPY	3.5	105
18	7PAI\|1\|4	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.7	105
19	7PAM\|1\|4	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.8	105
20	7PI9\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.3	105
21	7PAO\|1\|4	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	7	105
22	7PAJ\|1\|4	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	7.3	105
23	7PAU\|1\|4	free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.3	105
24	7PAR\|1\|4	70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.2	105
25	7PIP\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.3	105
26	7PAT\|1\|4	free 50S in untreated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.2	105
27	7PI8\|1\|4	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.9	105
28	7PHA\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.5	105
29	7PH9\|1\|4	70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.7	105
30	7PAH\|1\|4	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.5	105
31	7PIQ\|1\|4	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.7	105
32	7PIR\|1\|4	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	12.1	105
33	7PIA\|1\|4	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	13.6	105
34	7PIS\|1\|4	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	15	105
35	7PAS\|1\|4	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	16	105

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

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