RNA 3D Hub //

Equivalence class NR_all_76251.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17P6Z|1|4 (rep)5S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae 70S ribosome in untreated cellsElectron microscopy3.51052022-05-25
27PAL|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy4.71052022-05-25
37PAK|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy5.31052022-05-25
47PIB|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy4.71052022-05-25
57PHB|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy4.91052022-05-25
67PIT|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy5.71052022-05-25
77PI9|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy6.31052022-05-25
87PAI|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy6.71052022-05-25
97PAM|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy6.81052022-05-25
107PAO|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy71052022-05-25
117PAJ|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7.31052022-05-25
127PHA|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.51052022-05-25
137PAR|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.21052022-05-25
147PH9|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.71052022-05-25
157PAU|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF00001free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cellsElectron microscopy8.31052022-05-25
167PAQ|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.91052022-05-25
177PIC|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.11052022-05-25
187PI8|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy8.91052022-05-25
197PIP|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.31052022-05-25
207PAH|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.51052022-05-25
217PIO|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.51052022-05-25
227PAT|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF00001free 50S in untreated Mycoplasma pneumoniae cellsElectron microscopy9.21052022-05-25
237PIQ|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.71052022-05-25
247PAN|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.71052022-05-25
257PHC|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy9.91052022-05-25
267PIR|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy12.11052022-05-25
277PIA|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy13.61052022-05-25
287PIS|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy151052022-05-25
297PAS|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0000170S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy161052022-05-25
308P8B|1|45S ribosomal RNA5S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cellsElectron microscopy2.91082024-11-20
318P7X|1|45S ribosomal RNA5S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cellsElectron microscopy3.031082024-11-20
327OOD|1|45S ribosomal RNA5S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cellsElectron microscopy3.41052022-05-25
338P7Y|1|45S ribosomal RNA5S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunitElectron microscopy3.71082024-11-20
348P8V|1|45S ribosomal RNA5S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)Electron microscopy8.71082024-11-20
358P8W|1|45S ribosomal RNA5S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00001Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)Electron microscopy8.71082024-11-20

Release history

Release4.0
Date2025-08-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17PIC|1|470S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.1105
27PAQ|1|470S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.9105
37PIB|1|470S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.7105
47PIT|1|470S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.7105
57PAK|1|470S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.3105
67PHB|1|470S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.9105
77PAL|1|470S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.7105
88P7Y|1|4Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunitELECTRON MICROSCOPY3.7108
98P7X|1|4Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cellsELECTRON MICROSCOPY3.03108
108P8B|1|4Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cellsELECTRON MICROSCOPY2.9108
118P8W|1|4Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)ELECTRON MICROSCOPY8.7108
128P8V|1|4Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)ELECTRON MICROSCOPY8.7108
137OOD|1|4Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cellsELECTRON MICROSCOPY3.4105
147P6Z|1|4Mycoplasma pneumoniae 70S ribosome in untreated cellsELECTRON MICROSCOPY3.5105
157PAI|1|470S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.7105
167PAM|1|470S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.8105
177PI9|1|470S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.3105
187PAJ|1|470S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7.3105
197PAO|1|470S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7105
207PAU|1|4free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.3105
217PAR|1|470S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.2105
227PIP|1|470S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.3105
237PH9|1|470S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.7105
247PHA|1|470S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.5105
257PI8|1|470S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.9105
267PAT|1|4free 50S in untreated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.2105
277PIO|1|470S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.5105
287PAN|1|470S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.7105
297PIQ|1|470S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.7105
307PAH|1|470S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.5105
317PHC|1|470S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.9105
327PIR|1|470S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY12.1105
337PIA|1|470S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY13.6105
347PIS|1|470S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY15105
357PAS|1|470S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY16105

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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