NR_all_76251.5

Members (43)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7P6Z\|1\|4 (rep)	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 70S ribosome in untreated cells	Electron microscopy	3.5	105	2022-05-25
2	7PAL\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	4.7	105	2022-05-25
3	7PAK\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	5.3	105	2022-05-25
4	7PIB\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	4.7	105	2022-05-25
5	9SKE\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 50S RRF EF-G	Electron microscopy	4.8	105	2026-09-23
6	7PHB\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	4.9	105	2022-05-25
7	7PIT\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	5.7	105	2022-05-25
8	7PI9\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	6.3	105	2022-05-25
9	9SL6\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 70S eT-TC (flexible)	Electron microscopy	5.8	105	2026-09-23
10	7PAI\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	6.7	105	2022-05-25
11	7PAM\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	6.8	105	2022-05-25
12	7PAO\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	7	105	2022-05-25
13	7PAJ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	7.3	105	2022-05-25
14	9SL5\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 70S eT-TC (stable)	Electron microscopy	6.5	105	2026-09-23
15	9SL4\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 70S eT-TC (collided)	Electron microscopy	7.2	105	2026-09-23
16	7PHA\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	8.5	105	2022-05-25
17	7PAR\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	8.2	105	2022-05-25
18	9SKD\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 50S membrane complex	Electron microscopy	7.7	105	2026-09-23
19	7PH9\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	8.7	105	2022-05-25
20	7PAU\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells	Electron microscopy	8.3	105	2022-05-25
21	7PAQ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	8.9	105	2022-05-25
22	7PIC\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.1	105	2022-05-25
23	7PI8\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	8.9	105	2022-05-25
24	7PIP\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.3	105	2022-05-25
25	7PAH\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	9.5	105	2022-05-25
26	9SMD\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)	Electron microscopy	9.4	108	2026-09-23
27	7PIO\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.5	105	2022-05-25
28	7PAT\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	free 50S in untreated Mycoplasma pneumoniae cells	Electron microscopy	9.2	105	2022-05-25
29	7PIQ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	9.7	105	2022-05-25
30	7PAN\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	Electron microscopy	9.7	105	2022-05-25
31	7PHC\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	Electron microscopy	9.9	105	2022-05-25
32	7PIR\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	12.1	105	2022-05-25
33	7PIA\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	Electron microscopy	13.6	105	2022-05-25
34	7PIS\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	Electron microscopy	15	105	2022-05-25
35	7PAS\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells	Electron microscopy	16	105	2022-05-25
36	9SL7\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 70S transertion-like (stable RNAP)	Electron microscopy	26.7	105	2026-09-23
37	8P8B\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells	Electron microscopy	2.9	108	2024-11-20
38	8P7X\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells	Electron microscopy	3.03	108	2024-11-20
39	7OOD\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasma pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells	Electron microscopy	3.4	105	2022-05-25
40	8P7Y\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit	Electron microscopy	3.7	108	2024-11-20
41	9SKF\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Model of M. pneumoniae 70S membrane complex	Electron microscopy	8.6	105	2026-09-23
42	8P8W\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)	Electron microscopy	8.7	108	2024-11-20
43	8P8V\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Mycoplasmoides pneumoniae M129	Bacteria	RF00001	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)	Electron microscopy	8.7	108	2024-11-20

Release history

Release	4.58
Date	2026-09-23

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	9SL7\|1\|4	Model of M. pneumoniae 70S transertion-like (stable RNAP)	ELECTRON MICROSCOPY	26.7	105
2	7PIC\|1\|4	70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.1	105
3	7PIP\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.3	105
4	7PAR\|1\|4	70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.2	105
5	7PAU\|1\|4	free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.3	105
6	7PAO\|1\|4	70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	7	105
7	7PAJ\|1\|4	70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	7.3	105
8	7PI9\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.3	105
9	7PAM\|1\|4	70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.8	105
10	9SKF\|1\|4	Model of M. pneumoniae 70S membrane complex	ELECTRON MICROSCOPY	8.6	105
11	9SL5\|1\|4	Model of M. pneumoniae 70S eT-TC (stable)	ELECTRON MICROSCOPY	6.5	105
12	9SL6\|1\|4	Model of M. pneumoniae 70S eT-TC (flexible)	ELECTRON MICROSCOPY	5.8	105
13	7PAI\|1\|4	70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	6.7	105
14	9SL4\|1\|4	Model of M. pneumoniae 70S eT-TC (collided)	ELECTRON MICROSCOPY	7.2	105
15	7P6Z\|1\|4	Mycoplasma pneumoniae 70S ribosome in untreated cells	ELECTRON MICROSCOPY	3.5	105
16	7OOD\|1\|4	Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.4	105
17	8P8V\|1\|4	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)	ELECTRON MICROSCOPY	8.7	108
18	8P8W\|1\|4	Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)	ELECTRON MICROSCOPY	8.7	108
19	9SMD\|1\|4	Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)	ELECTRON MICROSCOPY	9.4	108
20	8P8B\|1\|4	Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells	ELECTRON MICROSCOPY	2.9	108
21	8P7X\|1\|4	Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells	ELECTRON MICROSCOPY	3.03	108
22	8P7Y\|1\|4	Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit	ELECTRON MICROSCOPY	3.7	108
23	7PAL\|1\|4	70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.7	105
24	7PHB\|1\|4	70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.9	105
25	7PAK\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	5.3	105
26	7PIT\|1\|4	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	5.7	105
27	7PIB\|1\|4	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	4.7	105
28	7PAQ\|1\|4	70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.9	105
29	7PIO\|1\|4	70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.5	105
30	9SKD\|1\|4	Model of M. pneumoniae 50S membrane complex	ELECTRON MICROSCOPY	7.7	105
31	7PAT\|1\|4	free 50S in untreated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.2	105
32	9SKE\|1\|4	Model of M. pneumoniae 50S RRF EF-G	ELECTRON MICROSCOPY	4.8	105
33	7PI8\|1\|4	70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.9	105
34	7PHA\|1\|4	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.5	105
35	7PH9\|1\|4	70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	8.7	105
36	7PAN\|1\|4	70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.7	105
37	7PIQ\|1\|4	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.7	105
38	7PAH\|1\|4	70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.5	105
39	7PHC\|1\|4	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	9.9	105
40	7PIR\|1\|4	70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	12.1	105
41	7PIA\|1\|4	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	13.6	105
42	7PIS\|1\|4	70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	15	105
43	7PAS\|1\|4	70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells	ELECTRON MICROSCOPY	16	105

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_76251.5 Current

Release history

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