#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18P03|1|1 (rep)Transfer RNAinitiator methionylated tRNA, m6A-methylated mRNAOryctolagus cuniculusEukaryaRF0000548S late-stage initiation complex with m6A mRNAElectron microscopy3.042024-03-20
28P09|1|1Transfer RNAinitiator methionylated tRNA, mRNAOryctolagus cuniculusEukaryaRF0000548S late-stage initiation complex with non methylated mRNAElectron microscopy3.32024-03-20
37SYS|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).Electron microscopy3.52022-07-27
47SYR|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).Electron microscopy3.62022-07-27
57SYW|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)Electron microscopy3.72022-07-13
67SYX|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)Electron microscopy3.72022-07-13
76HCJ|1|33Transfer RNAmRNA, P/E tRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
87SYV|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)Electron microscopy3.92022-07-20
97SYT|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)Electron microscopy4.42022-07-13
107SYU|1|iTransfer RNAMet-tRNA-i-MetOryctolagus cuniculusEukaryaRF00005Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)Electron microscopy4.62022-07-13
115K0Y|1|NTransfer RNAmRNA, tRNAOryctolagus cuniculusEukaryaRF00005m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceElectron microscopy5.82016-07-13
126HCQ|1|33Transfer RNAmRNA, P/E tRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit collided di-ribosome (collided monosome)Electron microscopy6.52018-10-17

Release history

Release3.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.364
Date2024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16HCQ|1|33Structure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.575
26HCJ|1|33Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.875
35K0Y|1|Nm48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit faceELECTRON MICROSCOPY5.875
47SYS|1|iStructure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).ELECTRON MICROSCOPY3.575
57SYR|1|iStructure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).ELECTRON MICROSCOPY3.675
67SYU|1|iStructure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)ELECTRON MICROSCOPY4.675
77SYT|1|iStructure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)ELECTRON MICROSCOPY4.475
88P03|1|148S late-stage initiation complex with m6A mRNAELECTRON MICROSCOPY3.0474
98P09|1|148S late-stage initiation complex with non methylated mRNAELECTRON MICROSCOPY3.374
107SYV|1|iStructure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)ELECTRON MICROSCOPY3.975
117SYW|1|iStructure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)ELECTRON MICROSCOPY3.775
127SYX|1|iStructure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)ELECTRON MICROSCOPY3.775

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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