RNA 3D Hub //

Equivalence class NR_all_79022.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16RXV|1|C1+ 6RXV|1|C2 (rep)Small subunit ribosomal RNA + U3 small nucleolar RNA35S ribosomal RNA, U3 snoRNAChaetomium thermophilumEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2Electron microscopy418052019-08-14
25OQL|1|1+ 5OQL|1|2Small subunit ribosomal RNA + U3 small nucleolar RNA35S rRNA, U3 snoRNAChaetomium thermophilumEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilumElectron microscopy3.215802017-10-11
36RXZ|1|C1+ 6RXZ|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35S ribosomal RNA, U3 snoRNAChaetomium thermophilumEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state bElectron microscopy4.417172019-08-14
46RXY|1|C1+ 6RXY|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35S rRNA, U3 snoRNAChaetomium thermophilumEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state aElectron microscopy4.713362019-08-14
56RXU|1|C1+ 6RXU|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35S rRNA, U3 snoRNAChaetomium thermophilumEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1Electron microscopy3.518052019-08-14
66RXT|1|C1+ 6RXT|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35S ribosomal RNA, U3 snoRNAChaetomium thermophilumEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state AElectron microscopy713822019-08-14
79XAG|1|C1+ 9XAG|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35s rna, u3 rnaThermochaetoides thermophilaEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1Electron microscopy2.818032026-06-24
89XA8|1|C1+ 9XA8|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35S rRNA, U3 snoRNAThermochaetoides thermophilaEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state B1Electron microscopy2.918162026-06-24
99XAH|1|C1+ 9XAH|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35s rna, u3 rnaThermochaetoides thermophilaEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1*Electron microscopy3.118032026-06-24
109XAF|1|C1+ 9XAF|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35s rna, u3 rnaThermochaetoides thermophilaEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state aElectron microscopy314182026-06-24
119XA7|1|C1+ 9XA7|1|C2Small subunit ribosomal RNA + U3 small nucleolar RNA35S rRNA, U3 snoRNAThermochaetoides thermophilaEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state AElectron microscopy3.214182026-06-24

Release history

Release4.45
Date2026-06-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15OQL|1|1+ 5OQL|1|2Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilumELECTRON MICROSCOPY3.21580
26RXV|1|C1+ 6RXV|1|C2Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2ELECTRON MICROSCOPY41805
36RXU|1|C1+ 6RXU|1|C2Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1ELECTRON MICROSCOPY3.51805
46RXT|1|C1+ 6RXT|1|C2Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state AELECTRON MICROSCOPY71382
59XAH|1|C1+ 9XAH|1|C2Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1*ELECTRON MICROSCOPY3.11803
69XAG|1|C1+ 9XAG|1|C2Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state B1ELECTRON MICROSCOPY2.81803
79XA7|1|C1+ 9XA7|1|C2Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state AELECTRON MICROSCOPY3.21418
89XA8|1|C1+ 9XA8|1|C2Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 WT) from Chaetomium thermophilum, state B1ELECTRON MICROSCOPY2.91816
96RXZ|1|C1+ 6RXZ|1|C2Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state bELECTRON MICROSCOPY4.41717
106RXY|1|C1+ 6RXY|1|C2Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state aELECTRON MICROSCOPY4.71336
119XAF|1|C1+ 9XAF|1|C2Cryo-EM structure of the 90S pre-ribosome (Enp1-Rrp12 Mut) from Chaetomium thermophilum, state aELECTRON MICROSCOPY31418

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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