Equivalence class NR_all_81965.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6D|1|D (rep) | RNA (5'-R(P*AP*G)-3') | synthetic construct | Vibrio cholerae Oligoribonuclease bound to pAG | X-ray diffraction | 1.53 | 2 | 2019-06-12 | |||
| 2 | 6N6K|1|C | RNA (5'-R(P*AP*G)-3') | synthetic construct | Human REXO2 bound to pAG | X-ray diffraction | 1.42 | 2 | 2019-06-12 | |||
| 3 | 6N6K|1|D | RNA (5'-R(P*AP*G)-3') | synthetic construct | Human REXO2 bound to pAG | X-ray diffraction | 1.42 | 2 | 2019-06-12 | |||
| 4 | 5O58|1|B | RNA (5'-R(P*AP*G)-3') | synthetic construct | Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG | X-ray diffraction | 1.55 | 2 | 2017-10-25 | |||
| 5 | 7MW8|1|J | pApG | synthetic construct | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-ray diffraction | 1.9 | 2 | 2022-05-18 | |||
| 6 | 7MW8|1|K | pApG | synthetic construct | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-ray diffraction | 1.9 | 1 | 2022-05-18 | |||
| 7 | 7MW8|1|L | pApG | synthetic construct | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-ray diffraction | 1.9 | 1 | 2022-05-18 | |||
| 8 | 7MW8|1|M | pApG | synthetic construct | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-ray diffraction | 1.9 | 1 | 2022-05-18 | |||
| 9 | 7MW8|1|N | pApG | synthetic construct | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-ray diffraction | 1.9 | 1 | 2022-05-18 | |||
| 10 | 7MW8|1|O | pApG | synthetic construct | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-ray diffraction | 1.9 | 1 | 2022-05-18 | |||
| 11 | 6TY9|1|M | Transcript | Cypovirus 1 | In situ structure of BmCPV RNA dependent RNA polymerase at initiation state | Electron microscopy | 2.9 | 2 | 2019-11-20 | |||
| 12 | 3RTJ|1|D | RNA (5'-R(*AP*G)-3') | Crystal structure of ricin bound with dinucleotide ApG | X-ray diffraction | 3 | 2 | 2011-08-31 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5O58|1|B | Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG | X-RAY DIFFRACTION | 1.55 | 2 | |
| 2 | 7MW8|1|N | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-RAY DIFFRACTION | 1.9 | 1 | |
| 3 | 7MW8|1|M | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-RAY DIFFRACTION | 1.9 | 1 | |
| 4 | 6TY9|1|M | In situ structure of BmCPV RNA dependent RNA polymerase at initiation state | ELECTRON MICROSCOPY | 2.9 | 2 | |
| 5 | 3RTJ|1|D | Crystal structure of ricin bound with dinucleotide ApG | X-RAY DIFFRACTION | 3 | 2 | |
| 6 | 6N6K|1|C | Human REXO2 bound to pAG | X-RAY DIFFRACTION | 1.42 | 2 | |
| 7 | 6N6K|1|D | Human REXO2 bound to pAG | X-RAY DIFFRACTION | 1.42 | 2 | |
| 8 | 7MW8|1|J | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-RAY DIFFRACTION | 1.9 | 2 | |
| 9 | 7MW8|1|L | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-RAY DIFFRACTION | 1.9 | 1 | |
| 10 | 7MW8|1|K | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-RAY DIFFRACTION | 1.9 | 1 | |
| 11 | 6N6D|1|D | Vibrio cholerae Oligoribonuclease bound to pAG | X-RAY DIFFRACTION | 1.53 | 2 | |
| 12 | 7MW8|1|O | Crystal Structure Analysis of Xac Nucleotide Pyrophosphatase/Phosphodiesterase | X-RAY DIFFRACTION | 1.9 | 1 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: