Equivalence class NR_all_83593.4 Obsolete
Showing 1 to 59 of 59 entries
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5AXM|1|P (rep) | Transfer RNA | RNA (75-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) | X-ray diffraction | 2.21 | 73 | 2016-08-03 |
| 2 | 1EVV|1|A | Transfer RNA | PHENYLALANINE TRANSFER RNA | Saccharomyces | Eukarya | RF00005 | CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION | X-ray diffraction | 2 | 76 | 2000-05-01 |
| 3 | 5AXN|1|P | Transfer RNA | RNA (75-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP | X-ray diffraction | 2.7 | 66 | 2016-08-03 |
| 4 | 1OB2|1|B | Transfer RNA | TRANSFER-RNA, PHE | Saccharomyces cerevisiae | Eukarya | RF00005 | E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA | X-ray diffraction | 3.35 | 76 | 2004-05-27 |
| 5 | 6LVR|1|D | Transfer RNA | yeast phenylalanine tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA | X-ray diffraction | 2.85 | 72 | 2020-08-12 |
| 6 | 3WC2|1|P | 76mer-tRNA | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG) | X-ray diffraction | 3.64 | 74 | 2013-12-18 | ||||
| 7 | 6LVR|1|B | Transfer RNA | yeast phenylalanine tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA | X-ray diffraction | 2.85 | 72 | 2020-08-12 |
| 8 | 3WC2|1|Q | 76mer-tRNA | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG) | X-ray diffraction | 3.64 | 73 | 2013-12-18 | ||||
| 9 | 1SZ1|1|F | T-RNA (76-MER) | Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes | X-ray diffraction | 6.21 | 76 | 2004-08-10 | ||||
| 10 | 1SZ1|1|E | T-RNA (76-MER) | Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes | X-ray diffraction | 6.21 | 76 | 2004-08-10 | ||||
| 11 | 4TNA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE | X-ray diffraction | 2.5 | 76 | 1978-04-12 |
| 12 | 1EHZ|1|A | Transfer RNA | TRANSFER RNA (PHE) | Saccharomyces cerevisiae | Eukarya | RF00005 | The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution | X-ray diffraction | 1.93 | 76 | 2000-10-02 |
| 13 | 8CCS|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | Electron microscopy | 1.97 | 76 | 2023-09-20 |
| 14 | 8CDR|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.04 | 76 | 2023-09-20 |
| 15 | 8CEH|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.05 | 76 | 2023-09-20 |
| 16 | 8CIV|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.47 | 76 | 2023-09-20 |
| 17 | 8CG8|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.57 | 76 | 2023-09-20 |
| 18 | 6XZ7|1|g | Transfer RNA | fMet-Phe-tRNA(Phe) | Saccharomyces cerevisiae | Eukarya | RF00005 | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | Electron microscopy | 2.1 | 76 | 2020-07-22 |
| 19 | 8CF5|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.71 | 76 | 2023-09-20 |
| 20 | 8CDL|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex | Electron microscopy | 2.72 | 76 | 2023-09-20 |
| 21 | 1I9V|1|A | Transfer RNA | PHENYLALANINE TRANSFER RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX | X-ray diffraction | 2.6 | 76 | 2001-06-04 |
| 22 | 6XZB|1|g2 | Transfer RNA | fMet-Phe-tRNA(Phe) | Saccharomyces cerevisiae | Eukarya | RF00005 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | Electron microscopy | 2.54 | 76 | 2020-11-04 |
| 23 | 8CKU|1|Bb | Transfer RNA | Messenger RNA, Transfer RNA Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin | Electron microscopy | 3.11 | 76 | 2023-09-20 |
| 24 | 6XIR|1|AZ | Transfer RNA | Transfer RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 73 | 2020-08-26 |
| 25 | 6XIR|1|AX | Transfer RNA | Transfer RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 73 | 2020-08-26 |
| 26 | 6GZ5|1|Bw | Transfer RNA | E/E-site-tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 76 | 2018-12-05 |
| 27 | 1TN1|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA | X-ray diffraction | 3 | 76 | 1987-01-15 |
| 28 | 1TN2|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA | X-ray diffraction | 3 | 76 | 1986-10-24 |
| 29 | 6GZ3|1|Bw | Transfer RNA | mRNA, pe/E-site-tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 76 | 2018-12-05 |
| 30 | 1TTT|1|F | TRANSFER RIBONUCLEIC ACID (YEAST, PHE) | Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex | X-ray diffraction | 2.7 | 76 | 1996-12-23 | ||||
| 31 | 5M1J|1|A3 | Transfer RNA | nonstop mRNA, yeast Phe-tRNA-Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 76 | 2017-01-18 |
| 32 | 8CTH|1|C | Transfer RNA | Phe-tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex | Electron microscopy | 3.3 | 74 | 2022-12-07 |
| 33 | 4TRA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-ray diffraction | 3 | 76 | 1987-11-06 |
| 34 | 6TNA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT | X-ray diffraction | 2.7 | 76 | 1979-01-16 |
| 35 | 6GQV|1|AY | Transfer RNA | Messenger RNA, Transfer RNA - Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | Electron microscopy | 4 | 76 | 2018-07-11 |
| 36 | 1TTT|1|D | TRANSFER RIBONUCLEIC ACID (YEAST, PHE) | Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex | X-ray diffraction | 2.7 | 76 | 1996-12-23 | ||||
| 37 | 1TTT|1|E | TRANSFER RIBONUCLEIC ACID (YEAST, PHE) | Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex | X-ray diffraction | 2.7 | 76 | 1996-12-23 | ||||
| 38 | 6GQB|1|AX | Transfer RNA | Messenger RNA, Transfer RNA - Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | Electron microscopy | 3.9 | 76 | 2018-07-11 |
| 39 | 6XIQ|1|AX | Transfer RNA | Transfer RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress | Electron microscopy | 4.2 | 76 | 2020-08-26 |
| 40 | 6XIQ|1|AZ | Transfer RNA | Transfer RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress | Electron microscopy | 4.2 | 76 | 2020-08-26 |
| 41 | 6GQ1|1|AX | Transfer RNA | Messenger RNA, Transfer RNA - Phe | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin) | Electron microscopy | 4.4 | 76 | 2018-07-11 |
| 42 | 1TRA|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES | X-ray diffraction | 3 | 76 | 1986-07-14 |
| 43 | 1JGQ|1|C | MESSENGER RNA MF36, tRNA(Phe) | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-ray diffraction | 5 | 76 | 2001-07-20 | ||||
| 44 | 1JGQ|1|B | tRNA(Phe) | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-ray diffraction | 5 | 76 | 2001-07-20 | ||||
| 45 | 4V42|1|AC | A- AND P-SITE MESSENGER RNA CODONS, TRNA(PHE) | Crystal structure of the ribosome at 5.5 A resolution. | X-ray diffraction | 5.5 | 76 | 2014-07-09 | ||||
| 46 | 4V42|1|AB | A- AND P-SITE MESSENGER RNA CODONS, TRNA(PHE) | Crystal structure of the ribosome at 5.5 A resolution. | X-ray diffraction | 5.5 | 76 | 2014-07-09 | ||||
| 47 | 1JGO|1|C | MESSENGER RNA MK27, tRNA(Phe) | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-ray diffraction | 5.6 | 76 | 2001-07-20 | ||||
| 48 | 1JGO|1|B | MESSENGER RNA MK27, tRNA(Phe) | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-ray diffraction | 5.6 | 76 | 2001-07-20 | ||||
| 49 | 4V69|1|AY | A/T-site tRNA Phe, mRNA | Ternary complex-bound E.coli 70S ribosome. | Electron microscopy | 6.7 | 76 | 2014-07-09 | ||||
| 50 | 1JGP|1|C | MESSENGER RNA MV36, tRNA(Phe) | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-ray diffraction | 7 | 76 | 2001-07-20 | ||||
| 51 | 1JGP|1|B | MESSENGER RNA MV36, tRNA(Phe) | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-ray diffraction | 7 | 76 | 2001-07-20 | ||||
| 52 | 1QZB|1|B | Phe-tRNA | Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state | Electron microscopy | 9 | 75 | 2003-11-04 | ||||
| 53 | 1QZA|1|B | Phe-tRNA | Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | Electron microscopy | 10 | 75 | 2003-11-04 | ||||
| 54 | 1LS2|1|B | Transfer RNA | Phenylalanine transfer RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome | Electron microscopy | 16.8 | 76 | 2002-06-26 |
| 55 | 1FCW|1|A | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 76 | 2000-08-11 |
| 56 | 1FCW|1|D | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 76 | 2000-08-11 |
| 57 | 1FCW|1|B | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 76 | 2000-08-11 |
| 58 | 1FCW|1|E | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 76 | 2000-08-11 |
| 59 | 1FCW|1|C | Transfer RNA | TRNAPHE | Saccharomyces cerevisiae | Eukarya | RF00005 | TRNA POSITIONS DURING THE ELONGATION CYCLE | Electron microscopy | 17 | 76 | 2000-08-11 |
Release history
| Release | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_83593.4 | NR_all_83593.3 | 3.301 | (51) 1EHZ|1|A, 1EVV|1|A, 1FCW|1|A, 1FCW|1|B, 1FCW|1|C, 1FCW|1|D, 1FCW|1|E, 1I9V|1|A, 1JGO|1|B, 1JGO|1|C, 1JGP|1|B, 1JGP|1|C, 1JGQ|1|B, 1JGQ|1|C, 1LS2|1|B, 1OB2|1|B, 1QZA|1|B, 1QZB|1|B, 1SZ1|1|E, 1SZ1|1|F, 1TN1|1|A, 1TN2|1|A, 1TRA|1|A, 1TTT|1|D, 1TTT|1|E, 1TTT|1|F, 3WC2|1|P, 3WC2|1|Q, 4TNA|1|A, 4TRA|1|A, 4V42|1|AB, 4V42|1|AC, 4V69|1|AY, 5AXM|1|P, 5AXN|1|P, 5M1J|1|A3, 6GQ1|1|AX, 6GQB|1|AX, 6GQV|1|AY, 6GZ3|1|Bw, 6GZ5|1|Bw, 6LVR|1|B, 6LVR|1|D, 6TNA|1|A, 6XIQ|1|AX, 6XIQ|1|AZ, 6XIR|1|AX, 6XIR|1|AZ, 6XZ7|1|g, 6XZB|1|g2, 8CTH|1|C | (8) 8CCS|1|Bb, 8CDL|1|Bb, 8CDR|1|Bb, 8CEH|1|Bb, 8CF5|1|Bb, 8CG8|1|Bb, 8CIV|1|Bb, 8CKU|1|Bb | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
Showing 1 to 59 of 59 entries
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 1QZB|1|B | Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state | ELECTRON MICROSCOPY | 9 | 75 | |
| 2 | 1QZA|1|B | Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | ELECTRON MICROSCOPY | 10 | 75 | |
| 3 | 1LS2|1|B | Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome | ELECTRON MICROSCOPY | 16.8 | 76 | |
| 4 | 4V69|1|AY | Ternary complex-bound E.coli 70S ribosome. | ELECTRON MICROSCOPY | 6.7 | 76 | |
| 5 | 1OB2|1|B | E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA | X-RAY DIFFRACTION | 3.35 | 76 | |
| 6 | 1TTT|1|E | Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex | X-RAY DIFFRACTION | 2.7 | 76 | |
| 7 | 1TTT|1|F | Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex | X-RAY DIFFRACTION | 2.7 | 76 | |
| 8 | 1TTT|1|D | Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex | X-RAY DIFFRACTION | 2.7 | 76 | |
| 9 | 5AXN|1|P | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP | X-RAY DIFFRACTION | 2.7 | 66 | |
| 10 | 5AXM|1|P | Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) | X-RAY DIFFRACTION | 2.21 | 73 | |
| 11 | 1EVV|1|A | CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION | X-RAY DIFFRACTION | 2 | 76 | |
| 12 | 1I9V|1|A | CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX | X-RAY DIFFRACTION | 2.6 | 76 | |
| 13 | 4TRA|1|A | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-RAY DIFFRACTION | 3 | 76 | |
| 14 | 1FCW|1|E | TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 76 | |
| 15 | 1FCW|1|C | TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 76 | |
| 16 | 1FCW|1|A | TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 76 | |
| 17 | 1FCW|1|B | TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 76 | |
| 18 | 1FCW|1|D | TRNA POSITIONS DURING THE ELONGATION CYCLE | ELECTRON MICROSCOPY | 17 | 76 | |
| 19 | 6TNA|1|A | CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT | X-RAY DIFFRACTION | 2.7 | 76 | |
| 20 | 1TN1|1|A | CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA | X-RAY DIFFRACTION | 3 | 76 | |
| 21 | 1TN2|1|A | CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA | X-RAY DIFFRACTION | 3 | 76 | |
| 22 | 4TNA|1|A | FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE | X-RAY DIFFRACTION | 2.5 | 76 | |
| 23 | 1TRA|1|A | RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES | X-RAY DIFFRACTION | 3 | 76 | |
| 24 | 1EHZ|1|A | The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution | X-RAY DIFFRACTION | 1.93 | 76 | |
| 25 | 8CTH|1|C | Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex | ELECTRON MICROSCOPY | 3.3 | 74 | |
| 26 | 1SZ1|1|E | Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes | X-RAY DIFFRACTION | 6.21 | 76 | |
| 27 | 1SZ1|1|F | Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes | X-RAY DIFFRACTION | 6.21 | 76 | |
| 28 | 1JGQ|1|B | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-RAY DIFFRACTION | 5 | 76 | |
| 29 | 1JGO|1|B | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-RAY DIFFRACTION | 5.6 | 76 | |
| 30 | 1JGP|1|B | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-RAY DIFFRACTION | 7 | 76 | |
| 31 | 4V42|1|AB | Crystal structure of the ribosome at 5.5 A resolution. | X-RAY DIFFRACTION | 5.5 | 76 | |
| 32 | 8CKU|1|Bb | Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin | ELECTRON MICROSCOPY | 3.11 | 76 | |
| 33 | 8CF5|1|Bb | Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.71 | 76 | |
| 34 | 8CDL|1|Bb | 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex | ELECTRON MICROSCOPY | 2.72 | 76 | |
| 35 | 8CCS|1|Bb | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | ELECTRON MICROSCOPY | 1.97 | 76 | |
| 36 | 8CG8|1|Bb | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.57 | 76 | |
| 37 | 8CEH|1|Bb | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.05 | 76 | |
| 38 | 8CDR|1|Bb | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.04 | 76 | |
| 39 | 8CIV|1|Bb | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.47 | 76 | |
| 40 | 6XZ7|1|g | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | ELECTRON MICROSCOPY | 2.1 | 76 | |
| 41 | 6XZB|1|g2 | E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification). | ELECTRON MICROSCOPY | 2.54 | 76 | |
| 42 | 5M1J|1|A3 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 76 | |
| 43 | 6LVR|1|D | Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA | X-RAY DIFFRACTION | 2.85 | 72 | |
| 44 | 6LVR|1|B | Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA | X-RAY DIFFRACTION | 2.85 | 72 | |
| 45 | 1JGO|1|C | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-RAY DIFFRACTION | 5.6 | 76 | |
| 46 | 1JGP|1|C | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-RAY DIFFRACTION | 7 | 76 | |
| 47 | 4V42|1|AC | Crystal structure of the ribosome at 5.5 A resolution. | X-RAY DIFFRACTION | 5.5 | 76 | |
| 48 | 1JGQ|1|C | The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY | X-RAY DIFFRACTION | 5 | 76 | |
| 49 | 3WC2|1|Q | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG) | X-RAY DIFFRACTION | 3.64 | 73 | |
| 50 | 3WC2|1|P | Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG) | X-RAY DIFFRACTION | 3.64 | 74 | |
| 51 | 6GZ5|1|Bw | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 76 | |
| 52 | 6GZ3|1|Bw | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 76 | |
| 53 | 6GQV|1|AY | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | ELECTRON MICROSCOPY | 4 | 76 | |
| 54 | 6GQB|1|AX | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | ELECTRON MICROSCOPY | 3.9 | 76 | |
| 55 | 6GQ1|1|AX | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin) | ELECTRON MICROSCOPY | 4.4 | 76 | |
| 56 | 6XIR|1|AX | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 73 | |
| 57 | 6XIR|1|AZ | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 73 | |
| 58 | 6XIQ|1|AZ | Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 4.2 | 76 | |
| 59 | 6XIQ|1|AX | Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 4.2 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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