#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15J7L|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction328972016-07-27
25J8A|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.128972016-07-06
35JC9|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.0328972016-07-06
44YBB|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.128972015-03-18
55IT8|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.1228972016-07-27
64WOI|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025414,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction328972015-08-05
74WOI|1|CALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025414,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction328972015-08-05
86I7V|1|DALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.928972018-12-05
95J91|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.9628972016-07-06
104V9P|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
115J88|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.3228972016-07-06
124V9P|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
134V9P|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
144V9P|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
154V9D|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction328972014-07-09
164V9O|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
174V9O|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
184WWW|1|RALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.128542014-12-24
194V9O|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
204V6C|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.1928542014-07-09
215J7L|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction328982016-07-27
224V7T|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.1928542014-07-09
234U27|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.828972014-07-30
244WF1|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.0928972014-11-05
255J8A|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.128982016-07-06
265JC9|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.0328982016-07-06
274V7U|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.128542014-07-09
284V7V|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.2928542014-07-09
294V52|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.2128412014-07-09
304U24|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.928972014-07-30
314U25|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.928972014-07-30
324V9D|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction328962014-07-09
334U26|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.828972014-07-30
344V7S|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.2528542014-07-09
354V57|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.528412014-07-09
364V52|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.2128412014-07-09
374V57|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.528412014-07-09
384V9O|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.928542014-07-09
394U1U|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9528972014-07-30
404V85|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.228532014-07-09
414V54|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.328412014-07-09
424V64|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.528412014-07-09
434V50|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.2228412014-07-09
444V54|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.328412014-07-09
454V64|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.528412014-07-09
466BY1|1|CALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli pH03H9 complexX-ray diffraction3.9428672019-02-27
474V53|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-ray diffraction3.5428412014-07-09
484V50|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.2228412014-07-09
494YBB|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.128982015-03-18
504U1V|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction328972014-07-30
515J88|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.3228982016-07-06
524V53|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-ray diffraction3.5428412014-07-09
534V9C|1|DALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.328972014-07-09
544V56|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-ray diffraction3.9328412014-07-09
554U20|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.928972014-07-30
564V56|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-ray diffraction3.9328412014-07-09
576I7V|1|CALarge subunit ribosomal RNA23S ribsomal RNAEscherichia coliBacteriaRF02541Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.928982018-12-05
586BY1|1|DALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli pH03H9 complexX-ray diffraction3.9428692019-02-27
594U27|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.828972014-07-30
604V55|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-ray diffraction428412014-07-09
614V4Q|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.4628412014-07-09
624V55|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-ray diffraction428412014-07-09
634V4Q|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.4628412014-07-09
644V6D|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.8128542014-07-09
654U25|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.928972014-07-30
664U1U|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.9528972014-07-30
674V9C|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.328972014-07-09
684U1V|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction328972014-07-30
694V89|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)X-ray diffraction3.728532014-07-09
705IT8|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.1228982016-07-27
714V6E|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.7128542014-07-09
724WF1|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.0928972014-11-05
734U24|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.928972014-07-30
744U26|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.828972014-07-30
754U20|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.928972014-07-30
764V6C|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.1928412014-07-09
774V5Y|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-ray diffraction4.4528412014-07-09
785J91|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.9628982016-07-06
794WWW|1|YALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.128412014-12-24
804V7T|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.1928412014-07-09
814V5Y|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-ray diffraction4.4528412014-07-09
824V6D|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.8128412014-07-09
834V7V|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.2928412014-07-09
844V7S|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.2528412014-07-09
854V7U|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.128412014-07-09
864V6E|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.7128412014-07-09
874V5B|1|CBLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Structure of PDF binding helix in complex with the ribosomeX-ray diffraction3.7428412014-07-09
884V5B|1|ABLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Structure of PDF binding helix in complex with the ribosomeX-ray diffraction3.7428412014-07-09
895J5B|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.828972016-07-27
904V4H|1|DBLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.4628412014-07-09
914V4H|1|BBLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.4628412014-07-09
925J5B|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.828982016-07-27
936HRM|1|1Small subunit ribosomal RNAstapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNAEscherichia coliBacteriaRF02541E. coli 70S d2d8 stapled ribosomeElectron microscopy2.9644502018-12-19
945AFI|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025412.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.929002015-03-11
955NWY|1|NLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF025412.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexElectron microscopy2.928972017-07-19
965H5U|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Mechanistic insights into the alternative translation termination by ArfA and RF2Electron microscopy3.0128972017-01-25
975MDV|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)Electron microscopy2.9729032016-12-14
986H4N|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeElectron microscopy329002018-09-05
995MDW|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.0629032016-12-14
1005MGP|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.129002016-12-14
1015MDZ|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome (empty A site)Electron microscopy3.129032016-12-14
1025U9G|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025413.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)Electron microscopy3.229032017-03-22
1035U9F|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025413.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)Electron microscopy3.229032017-03-22
1045UYM|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)Electron microscopy3.229032017-06-07
1056ENU|1|ALarge subunit ribosomal RNA23S Ribosomal RNAEscherichia coliBacteriaRF02541Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.128712017-11-22
1065WFS|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy329002018-05-02
1075WE4|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu wt complex with GppNHpElectron microscopy3.129002018-04-25
1083JBV|1|bLarge subunit ribosomal RNARNA (2903-MER)Escherichia coliBacteriaRF02541Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.3229032016-01-27
1094V80|1|BALarge subunit ribosomal RNA23S rRNARF02541Crystal structure of the E. coli ribosome bound to CEM-101.X-ray diffraction3.328542014-07-09
1106C4I|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Conformation of methylated GGQ in the peptidyl transferase center during translation terminationElectron microscopy3.2429042018-02-21
1114V80|1|DALarge subunit ribosomal RNA23S rRNARF02541Crystal structure of the E. coli ribosome bound to CEM-101.X-ray diffraction3.328412014-07-09
1125WDT|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy329002018-04-25
1136ENF|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.228072017-11-22
1145GAE|1|ALarge subunit ribosomal RNA23S rRNA, tRNA CCA end (5'-R(P*CP*CP*A)-3')Escherichia coliBacteriaRF02541RNC in complex with a translocating SecYEGElectron microscopy3.3328842016-01-27
1153JCE|1|ALarge subunit ribosomal RNA23 ribosomal RNAEscherichia coliBacteriaRF02541Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.229032016-01-13
1165MDY|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.3529032016-12-21
1175LZD|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)Electron microscopy3.429032016-11-23
1185WE6|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GTP and cognate tRNAElectron microscopy3.429002018-04-25
1196I0Y|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelElectron microscopy3.228542018-12-05
1206BU8|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome with S1 domains 1 and 2 (Class 1)Electron microscopy3.529032018-01-31
1215WFK|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)Electron microscopy3.429002018-05-02
1225O2R|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeElectron microscopy3.429002017-07-26
1235LZE|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)Electron microscopy3.529002016-11-23
1245U4I|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeElectron microscopy3.529042017-01-11
1255UYL|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)Electron microscopy3.629032017-06-14
1265IQR|1|1Large subunit ribosomal RNALSU rRNAEscherichia coliBacteriaRF02541Structure of RelA bound to the 70S ribosomeElectron microscopy329042016-05-04
1273JBU|1|bLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.6429032016-01-27
1285LZA|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)Electron microscopy3.629002016-11-23
1295KCR|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolutionElectron microscopy3.628972016-08-17
1305JU8|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAElectron microscopy3.628972016-07-20
1315JTE|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAElectron microscopy3.628972016-07-20
1323J9Z|1|LALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GElectron microscopy3.629042015-07-01
1336DNC|1|BLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codonElectron microscopy3.729032018-07-04
1343JCJ|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationElectron microscopy3.728542016-03-09
1355WF0|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF0254170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)Electron microscopy3.629002018-05-02
1365UYQ|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)Electron microscopy3.829032017-06-07
1376ENJ|1|ALarge subunit ribosomal RNA23S Ribosomal RNAEscherichia coliBacteriaRF02541Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.728712017-11-22
1385L3P|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexElectron microscopy3.728902016-07-20
1395GAD|1|ALarge subunit ribosomal RNA23S rRNA, tRNA CCAendEscherichia coliBacteriaRF02541RNC-SRP-SR complex early stateElectron microscopy3.728832016-01-27
1406GC8|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254150S ribosomal subunit assembly intermediate - 50S rec*Electron microscopy3.828972018-06-20
1415UYP|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)Electron microscopy3.929032017-06-07
1425UYK|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)Electron microscopy3.929032017-06-07
1436GWT|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)Electron microscopy3.828962018-08-15
1445KPW|1|27Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)Electron microscopy3.929032016-09-28
1456GXM|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)Electron microscopy3.828962018-08-22
1465GAG|1|ALarge subunit ribosomal RNA23S rRNA, tRNA CCAendEscherichia coliBacteriaRF02541RNC in complex with SRP-SR in the closed stateElectron microscopy3.828832016-01-27
1475GAH|1|ALarge subunit ribosomal RNA23S rRNA, tRNA CCAendEscherichia coliBacteriaRF02541RNC in complex with SRP with detached NG domainElectron microscopy3.828832016-01-27
1486GBZ|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254150S ribosomal subunit assembly intermediate state 5Electron microscopy3.827892018-06-20
1495KPS|1|28Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)Electron microscopy3.929032016-09-28
1505UYN|1|01Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)Electron microscopy429032017-06-07
1516GC0|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254150S ribosomal subunit assembly intermediate state 4Electron microscopy3.827292018-06-20
1523J9Y|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosomeElectron microscopy3.929002015-04-15
1536GXO|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)Electron microscopy3.929002018-08-15
1546GXN|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)Electron microscopy3.928952018-08-15
1555KPX|1|27Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)Electron microscopy3.929032016-09-28
1563JCD|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.729032016-01-13
1574UY8|1|ALarge subunit ribosomal RNARRNA-23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeElectron microscopy3.828542014-10-29
1585KCS|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolutionElectron microscopy3.929002016-08-17
1593J7Z|1|ALarge subunit ribosomal RNA23S rRNA, P-tRNA CCA-endEscherichia coliBacteriaRF02541Structure of the E. coli 50S subunit with ErmCL nascent chainElectron microscopy3.928542014-10-22
1605NP6|1|YLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S structure prior to bypassingElectron microscopy3.629032017-06-14
1615KPV|1|27Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)Electron microscopy4.129032016-09-28
1625GAF|1|ALarge subunit ribosomal RNA23S ribosomal RNA, tRNA CCAendEscherichia coliBacteriaRF02541RNC in complex with SRPElectron microscopy4.328832016-02-03
1636GXP|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)Electron microscopy4.428962018-08-15
1646Q98|1|1Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of tmRNA SmpB bound in P site of E. coli 70S ribosomeElectron microscopy4.329032019-02-27
1653JA1|1|LALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GElectron microscopy3.629042015-07-01
1663JCN|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex IElectron microscopy4.628972016-03-09
1676GC4|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254150S ribosomal subunit assembly intermediate state 3Electron microscopy4.325862018-07-04
1685LZF|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)Electron microscopy4.629002016-11-23
1695LZC|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)Electron microscopy4.829032016-11-23
1705NCO|1|ALarge subunit ribosomal RNA23S rRNA, P-site tRNA-CCA endEscherichia coliBacteriaRF02541Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosomeElectron microscopy4.828832017-05-24
1716GC6|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254150S ribosomal subunit assembly intermediate state 2Electron microscopy4.320922018-07-04
1726C4H|1|ALarge subunit ribosomal RNA23S rRNA, P-site tRNA fMetEscherichia coliBacteriaRF02541Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)Electron microscopy3.16362018-02-21
1736GC7|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254150S ribosomal subunit assembly intermediate state 1Electron microscopy4.319012018-06-20
1745LZB|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)Electron microscopy5.329032016-11-23
1754CSU|1|BLarge subunit ribosomal RNA23S RRNAEscherichia coliBacteriaRF02541Cryo-EM structures of the 50S ribosome subunit bound with ObgEElectron microscopy5.529032014-06-04
1764V5H|1|BBLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.Electron microscopy5.829032014-07-09
1775U4J|1|ALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeElectron microscopy3.7112017-01-11
1783J8G|1|BLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunitElectron microscopy528742014-11-26
1794V69|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Ternary complex-bound E.coli 70S ribosome.Electron microscopy6.729032014-07-09
1805AKA|1|BLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541EM structure of ribosome-SRP-FtsY complex in closed stateElectron microscopy5.728412015-03-25
1814V6M|1|B8Large subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Structure of the ribosome-SecYE complex in the membrane environmentElectron microscopy7.129042014-07-09
1824V7B|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Visualization of two tRNAs trapped in transit during EF-G-mediated translocationElectron microscopy6.828542014-07-09
1835ADY|1|BLarge subunit ribosomal RNA23S RRNAEscherichia coliBacteriaRF02541Cryo-EM structures of the 50S ribosome subunit bound with HflXElectron microscopy4.529032015-10-14
1843J5L|1|ALarge subunit ribosomal RNA23S ribsomal RNA, 5'-R(*CP*(MA6))-3', 5'-R(*CP*CP*A)-3'Escherichia coliBacteriaRF02541Structure of the E. coli 50S subunit with ErmBL nascent chainElectron microscopy6.628532014-03-26
1854V7C|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)Electron microscopy7.628972014-07-09
1864V7D|1|AALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)Electron microscopy7.628972014-07-09
1876H58|1|AALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02540Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli RibosomeElectron microscopy7.929002018-09-05
1886H58|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli RibosomeElectron microscopy7.929002018-09-05
1894V6K|1|ABLarge subunit ribosomal RNAribosomal RNA 23SEscherichia coliBacteriaRF02541Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy8.2529042014-07-09
1904V7A|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)Electron microscopy929032014-07-09
1914V65|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy929032014-07-09
1924V66|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy929032014-07-09
1934V6T|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loadingElectron microscopy8.329032014-07-09
1942J28|1|BLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541MODEL OF E. COLI SRP BOUND TO 70S RNCSElectron microscopy9.528412006-11-08
1952RDO|1|BLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF0254150S subunit with EF-G(GDPNP) and RRF boundElectron microscopy9.128412008-03-04
1964V6V|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Tetracycline resistance protein Tet(O) bound to the ribosomeElectron microscopy9.829042014-07-09
1974V6R|1|BBLarge subunit ribosomal RNA23S ribomosomal RNAEscherichia coliBacteriaRF02541Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)Electron microscopy11.529042014-07-09
1984V6Q|1|BBLarge subunit ribosomal RNA23S ribomosomal RNAEscherichia coliBacteriaRF02541Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)Electron microscopy11.529042014-07-09
1994V7I|1|A8Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Ribosome-SecY complex.Electron microscopy9.629032014-07-09
2004V48|1|A0Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeElectron microscopy11.525362014-07-09
2014V75|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)Electron microscopy1229032014-07-09
2024V6Z|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)Electron microscopy1229032014-07-09
2034V6Y|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)Electron microscopy1229032014-07-09
2043BBX|1|BLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexElectron microscopy1029022008-10-21
2054V6N|1|ABLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)Electron microscopy12.129042014-07-09
2064V47|1|A0Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosomeElectron microscopy12.325362014-07-09
2074V72|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)Electron microscopy1329032014-07-09
2084V6S|1|ABLarge subunit ribosomal RNA23S ribomosomal RNAEscherichia coliBacteriaRF02541Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)Electron microscopy13.129042014-07-09
2094V6L|1|BBLarge subunit ribosomal RNA50S ribosomal RNA 23SEscherichia coliBacteriaRF02541Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy13.229042014-07-09
2104V6P|1|BBLarge subunit ribosomal RNA23S ribomosomal RNAEscherichia coliBacteriaRF02541Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)Electron microscopy13.529042014-07-09
2114V6O|1|BBLarge subunit ribosomal RNA23S ribomosomal RNAEscherichia coliBacteriaRF02541Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)Electron microscopy14.729042014-07-09
2124V73|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)Electron microscopy1529032014-07-09
2134V79|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)Electron microscopy1529032014-07-09
2144V4W|1|B0Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy1527402014-07-09
2154V4V|1|B0Large subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy1527402014-07-09
2164V76|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)Electron microscopy1729032014-07-09
2174V70|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)Electron microscopy1729032014-07-09
2184V74|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF0254170S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)Electron microscopy1729032014-07-09
2194V77|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)Electron microscopy1729032014-07-09
2201C2W|1|BLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF0254123S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTIONElectron microscopy7.529042000-04-10
2214V78|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)Electron microscopy2029032014-07-09
2224V71|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)Electron microscopy2029032014-07-09

Release history

Release3.633.64
Date2019-03-012019-03-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_83717.43NR_all_83717.423.63(219) 1C2W|1|B, 2J28|1|B, 2RDO|1|B, 3BBX|1|B, 3J5L|1|A, 3J7Z|1|A, 3J8G|1|B, 3J9Y|1|A, 3J9Z|1|LA, 3JA1|1|LA, 3JBU|1|b, 3JBV|1|b, 3JCD|1|A, 3JCE|1|A, 3JCJ|1|A, 3JCN|1|A, 4CSU|1|B, 4U1U|1|BA, 4U1U|1|DA, 4U1V|1|BA, 4U1V|1|DA, 4U20|1|BA, 4U20|1|DA, 4U24|1|BA, 4U24|1|DA, 4U25|1|BA, 4U25|1|DA, 4U26|1|BA, 4U26|1|DA, 4U27|1|BA, 4U27|1|DA, 4UY8|1|A, 4V47|1|A0, 4V48|1|A0, 4V4H|1|BB, 4V4H|1|DB, 4V4Q|1|BB, 4V4Q|1|DB, 4V4V|1|B0, 4V4W|1|B0, 4V50|1|BB, 4V50|1|DB, 4V52|1|BB, 4V52|1|DB, 4V53|1|BB, 4V53|1|DB, 4V54|1|BB, 4V54|1|DB, 4V55|1|BB, 4V55|1|DB, 4V56|1|BB, 4V56|1|DB, 4V57|1|BB, 4V57|1|DB, 4V5B|1|AB, 4V5B|1|CB, 4V5H|1|BB, 4V5Y|1|BB, 4V5Y|1|DB, 4V64|1|BB, 4V64|1|DB, 4V65|1|BB, 4V66|1|BB, 4V69|1|BB, 4V6C|1|BA, 4V6C|1|DA, 4V6D|1|BA, 4V6D|1|DA, 4V6E|1|BA, 4V6E|1|DA, 4V6K|1|AB, 4V6L|1|BB, 4V6M|1|B8, 4V6N|1|AB, 4V6O|1|BB, 4V6P|1|BB, 4V6Q|1|BB, 4V6R|1|BB, 4V6S|1|AB, 4V6T|1|BA, 4V6V|1|BA, 4V6Y|1|BA, 4V6Z|1|BA, 4V70|1|BA, 4V71|1|BA, 4V72|1|BA, 4V73|1|BA, 4V74|1|BA, 4V75|1|BA, 4V76|1|BA, 4V77|1|BA, 4V78|1|BA, 4V79|1|BA, 4V7A|1|BA, 4V7B|1|BA, 4V7C|1|BA, 4V7D|1|AA, 4V7I|1|A8, 4V7S|1|BA, 4V7S|1|DA, 4V7T|1|BA, 4V7T|1|DA, 4V7U|1|BA, 4V7U|1|DA, 4V7V|1|BA, 4V7V|1|DA, 4V80|1|BA, 4V80|1|DA, 4V85|1|BA, 4V89|1|BA, 4V9C|1|BA, 4V9C|1|DA, 4V9D|1|CA, 4V9D|1|DA, 4V9O|1|AA, 4V9O|1|CA, 4V9O|1|EA, 4V9O|1|GA, 4V9P|1|AA, 4V9P|1|CA, 4V9P|1|EA, 4V9P|1|GA, 4WF1|1|BA, 4WF1|1|DA, 4WOI|1|BA, 4WOI|1|CA, 4WWW|1|RA, 4WWW|1|YA, 4YBB|1|CA, 4YBB|1|DA, 5ADY|1|B, 5AFI|1|A, 5AKA|1|B, 5GAD|1|A, 5GAE|1|A, 5GAF|1|A, 5GAG|1|A, 5GAH|1|A, 5H5U|1|A, 5IQR|1|1, 5IT8|1|CA, 5IT8|1|DA, 5J5B|1|CA, 5J5B|1|DA, 5J7L|1|CA, 5J7L|1|DA, 5J88|1|CA, 5J88|1|DA, 5J8A|1|CA, 5J8A|1|DA, 5J91|1|CA, 5J91|1|DA, 5JC9|1|CA, 5JC9|1|DA, 5JTE|1|BA, 5JU8|1|BA, 5KCR|1|1A, 5KCS|1|1A, 5KPS|1|28, 5KPV|1|27, 5KPW|1|27, 5KPX|1|27, 5L3P|1|A, 5LZA|1|A, 5LZB|1|A, 5LZC|1|A, 5LZD|1|A, 5LZE|1|A, 5LZF|1|A, 5MDV|1|1, 5MDW|1|1, 5MDY|1|1, 5MDZ|1|1, 5MGP|1|A, 5NCO|1|A, 5NP6|1|Y, 5NWY|1|N, 5O2R|1|A, 5U4I|1|A, 5U4J|1|A, 5U9F|1|01, 5U9G|1|01, 5UYK|1|01, 5UYL|1|01, 5UYM|1|01, 5UYN|1|01, 5UYP|1|01, 5UYQ|1|01, 5WDT|1|A, 5WE4|1|A, 5WE6|1|A, 5WF0|1|A, 5WFK|1|A, 5WFS|1|A, 6BU8|1|01, 6C4H|1|A, 6C4I|1|A, 6DNC|1|B, 6ENF|1|A, 6ENJ|1|A, 6ENU|1|A, 6GBZ|1|A, 6GC0|1|A, 6GC4|1|A, 6GC6|1|A, 6GC7|1|A, 6GC8|1|A, 6GWT|1|A, 6GXM|1|A, 6GXN|1|A, 6GXO|1|A, 6GXP|1|A, 6H4N|1|A, 6H58|1|A, 6H58|1|AA, 6HRM|1|1, 6I0Y|1|A, 6I7V|1|CA, 6I7V|1|DA(3) 6BY1|1|CA, 6BY1|1|DA, 6Q98|1|1(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_83717.43NR_all_83717.443.65(222) 1C2W|1|B, 2J28|1|B, 2RDO|1|B, 3BBX|1|B, 3J5L|1|A, 3J7Z|1|A, 3J8G|1|B, 3J9Y|1|A, 3J9Z|1|LA, 3JA1|1|LA, 3JBU|1|b, 3JBV|1|b, 3JCD|1|A, 3JCE|1|A, 3JCJ|1|A, 3JCN|1|A, 4CSU|1|B, 4U1U|1|BA, 4U1U|1|DA, 4U1V|1|BA, 4U1V|1|DA, 4U20|1|BA, 4U20|1|DA, 4U24|1|BA, 4U24|1|DA, 4U25|1|BA, 4U25|1|DA, 4U26|1|BA, 4U26|1|DA, 4U27|1|BA, 4U27|1|DA, 4UY8|1|A, 4V47|1|A0, 4V48|1|A0, 4V4H|1|BB, 4V4H|1|DB, 4V4Q|1|BB, 4V4Q|1|DB, 4V4V|1|B0, 4V4W|1|B0, 4V50|1|BB, 4V50|1|DB, 4V52|1|BB, 4V52|1|DB, 4V53|1|BB, 4V53|1|DB, 4V54|1|BB, 4V54|1|DB, 4V55|1|BB, 4V55|1|DB, 4V56|1|BB, 4V56|1|DB, 4V57|1|BB, 4V57|1|DB, 4V5B|1|AB, 4V5B|1|CB, 4V5H|1|BB, 4V5Y|1|BB, 4V5Y|1|DB, 4V64|1|BB, 4V64|1|DB, 4V65|1|BB, 4V66|1|BB, 4V69|1|BB, 4V6C|1|BA, 4V6C|1|DA, 4V6D|1|BA, 4V6D|1|DA, 4V6E|1|BA, 4V6E|1|DA, 4V6K|1|AB, 4V6L|1|BB, 4V6M|1|B8, 4V6N|1|AB, 4V6O|1|BB, 4V6P|1|BB, 4V6Q|1|BB, 4V6R|1|BB, 4V6S|1|AB, 4V6T|1|BA, 4V6V|1|BA, 4V6Y|1|BA, 4V6Z|1|BA, 4V70|1|BA, 4V71|1|BA, 4V72|1|BA, 4V73|1|BA, 4V74|1|BA, 4V75|1|BA, 4V76|1|BA, 4V77|1|BA, 4V78|1|BA, 4V79|1|BA, 4V7A|1|BA, 4V7B|1|BA, 4V7C|1|BA, 4V7D|1|AA, 4V7I|1|A8, 4V7S|1|BA, 4V7S|1|DA, 4V7T|1|BA, 4V7T|1|DA, 4V7U|1|BA, 4V7U|1|DA, 4V7V|1|BA, 4V7V|1|DA, 4V80|1|BA, 4V80|1|DA, 4V85|1|BA, 4V89|1|BA, 4V9C|1|BA, 4V9C|1|DA, 4V9D|1|CA, 4V9D|1|DA, 4V9O|1|AA, 4V9O|1|CA, 4V9O|1|EA, 4V9O|1|GA, 4V9P|1|AA, 4V9P|1|CA, 4V9P|1|EA, 4V9P|1|GA, 4WF1|1|BA, 4WF1|1|DA, 4WOI|1|BA, 4WOI|1|CA, 4WWW|1|RA, 4WWW|1|YA, 4YBB|1|CA, 4YBB|1|DA, 5ADY|1|B, 5AFI|1|A, 5AKA|1|B, 5GAD|1|A, 5GAE|1|A, 5GAF|1|A, 5GAG|1|A, 5GAH|1|A, 5H5U|1|A, 5IQR|1|1, 5IT8|1|CA, 5IT8|1|DA, 5J5B|1|CA, 5J5B|1|DA, 5J7L|1|CA, 5J7L|1|DA, 5J88|1|CA, 5J88|1|DA, 5J8A|1|CA, 5J8A|1|DA, 5J91|1|CA, 5J91|1|DA, 5JC9|1|CA, 5JC9|1|DA, 5JTE|1|BA, 5JU8|1|BA, 5KCR|1|1A, 5KCS|1|1A, 5KPS|1|28, 5KPV|1|27, 5KPW|1|27, 5KPX|1|27, 5L3P|1|A, 5LZA|1|A, 5LZB|1|A, 5LZC|1|A, 5LZD|1|A, 5LZE|1|A, 5LZF|1|A, 5MDV|1|1, 5MDW|1|1, 5MDY|1|1, 5MDZ|1|1, 5MGP|1|A, 5NCO|1|A, 5NP6|1|Y, 5NWY|1|N, 5O2R|1|A, 5U4I|1|A, 5U4J|1|A, 5U9F|1|01, 5U9G|1|01, 5UYK|1|01, 5UYL|1|01, 5UYM|1|01, 5UYN|1|01, 5UYP|1|01, 5UYQ|1|01, 5WDT|1|A, 5WE4|1|A, 5WE6|1|A, 5WF0|1|A, 5WFK|1|A, 5WFS|1|A, 6BU8|1|01, 6BY1|1|CA, 6BY1|1|DA, 6C4H|1|A, 6C4I|1|A, 6DNC|1|B, 6ENF|1|A, 6ENJ|1|A, 6ENU|1|A, 6GBZ|1|A, 6GC0|1|A, 6GC4|1|A, 6GC6|1|A, 6GC7|1|A, 6GC8|1|A, 6GWT|1|A, 6GXM|1|A, 6GXN|1|A, 6GXO|1|A, 6GXP|1|A, 6H4N|1|A, 6H58|1|A, 6H58|1|AA, 6HRM|1|1, 6I0Y|1|A, 6I7V|1|CA, 6I7V|1|DA, 6Q98|1|1(0) (1) 6Q97|1|1

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
15U4J|1|AStructural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.711
25U4I|1|AStructural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.52904
35IQR|1|1Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32904
46C4H|1|AConformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)ELECTRON MICROSCOPY3.1636
56C4I|1|AConformation of methylated GGQ in the peptidyl transferase center during translation terminationELECTRON MICROSCOPY3.242904
65MDV|1|1Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.972903
75MDW|1|1Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.062903
85MDZ|1|1Structure of the 70S ribosome (empty A site)ELECTRON MICROSCOPY3.12903
96Q98|1|1Structure of tmRNA SmpB bound in P site of E. coli 70S ribosomeELECTRON MICROSCOPY4.32903
105GAD|1|ARNC-SRP-SR complex early stateELECTRON MICROSCOPY3.72883
115GAF|1|ARNC in complex with SRPELECTRON MICROSCOPY4.32883
125GAH|1|ARNC in complex with SRP with detached NG domainELECTRON MICROSCOPY3.82883
135NCO|1|AQuaternary complex between SRP, SR, and SecYEG bound to the translating ribosomeELECTRON MICROSCOPY4.82883
145GAG|1|ARNC in complex with SRP-SR in the closed stateELECTRON MICROSCOPY3.82883
155GAE|1|ARNC in complex with a translocating SecYEGELECTRON MICROSCOPY3.332884
163J9Z|1|LAActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62904
174V69|1|BBTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72903
183JCE|1|AStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.22903
193JCD|1|AStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.72903
205H5U|1|AMechanistic insights into the alternative translation termination by ArfA and RF2ELECTRON MICROSCOPY3.012897
215WE6|1|A70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.42900
225WFK|1|A70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.42900
235WF0|1|A70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)ELECTRON MICROSCOPY3.62900
245WDT|1|A70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY32900
255WE4|1|A70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.12900
265WFS|1|A70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY32900
275KPV|1|27Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)ELECTRON MICROSCOPY4.12903
285KPS|1|28Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)ELECTRON MICROSCOPY3.92903
295KPX|1|27Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)ELECTRON MICROSCOPY3.92903
305KPW|1|27Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)ELECTRON MICROSCOPY3.92903
316H58|1|AStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli RibosomeELECTRON MICROSCOPY7.92900
326H4N|1|AStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY32900
336H58|1|AAStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli RibosomeELECTRON MICROSCOPY7.92900
345MGP|1|AStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.12900
355O2R|1|ACryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeELECTRON MICROSCOPY3.42900
365KCS|1|1ACryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolutionELECTRON MICROSCOPY3.92900
375AFI|1|A2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92900
383J9Y|1|ACryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosomeELECTRON MICROSCOPY3.92900
395UYM|1|0170S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.22903
405UYL|1|0170S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)ELECTRON MICROSCOPY3.62903
415UYK|1|0170S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)ELECTRON MICROSCOPY3.92903
425UYQ|1|0170S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)ELECTRON MICROSCOPY3.82903
435UYN|1|0170S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)ELECTRON MICROSCOPY42903
445UYP|1|0170S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)ELECTRON MICROSCOPY3.92903
455U9F|1|013.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)ELECTRON MICROSCOPY3.22903
466DNC|1|BE.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codonELECTRON MICROSCOPY3.72903
475U9G|1|013.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)ELECTRON MICROSCOPY3.22903
486BU8|1|0170S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.52903
495LZE|1|AStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.52900
505LZA|1|AStructure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)ELECTRON MICROSCOPY3.62900
515LZD|1|AStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.42903
525LZC|1|AStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)ELECTRON MICROSCOPY4.82903
535LZB|1|AStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)ELECTRON MICROSCOPY5.32903
546BY1|1|CAE. coli pH03H9 complexX-RAY DIFFRACTION3.942867
555JTE|1|BACryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNAELECTRON MICROSCOPY3.62897
565JU8|1|BACryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNAELECTRON MICROSCOPY3.62897
575NWY|1|N2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.92897
585MDY|1|1Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.352903
594V5H|1|BBE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.ELECTRON MICROSCOPY5.82903
604V6M|1|B8Structure of the ribosome-SecYE complex in the membrane environmentELECTRON MICROSCOPY7.12904
614V6V|1|BATetracycline resistance protein Tet(O) bound to the ribosomeELECTRON MICROSCOPY9.82904
626BY1|1|DAE. coli pH03H9 complexX-RAY DIFFRACTION3.942869
634V5B|1|CBStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742841
644V50|1|DBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
652J28|1|BMODEL OF E. COLI SRP BOUND TO 70S RNCSELECTRON MICROSCOPY9.52841
664V4Q|1|DBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
674V4H|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
684V54|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
694V53|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542841
704V55|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42841
714V5Y|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452841
724V52|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
734V64|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
744V57|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
754V56|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932841
765KCR|1|1ACryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolutionELECTRON MICROSCOPY3.62897
774YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12897
785J5B|1|DAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82897
795J91|1|DAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962897
805J8A|1|DAStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.12897
815J7L|1|DAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32897
825JC9|1|DAStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.032897
835IT8|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.122897
845J88|1|DAStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.322897
856I7V|1|DARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92897
864V7V|1|BACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292854
874V7S|1|BACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252854
884V80|1|BACrystal structure of the E. coli ribosome bound to CEM-101.X-RAY DIFFRACTION3.32854
894WWW|1|RACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12854
904V6C|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192854
914V7T|1|BACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192854
924V7U|1|BACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12854
933J5L|1|AStructure of the E. coli 50S subunit with ErmBL nascent chainELECTRON MICROSCOPY6.62853
944V6D|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812854
954V6E|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712854
965JC9|1|CAStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.032898
975J7L|1|CAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32898
985J8A|1|CAStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.12898
995J5B|1|CAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82898
1005J91|1|CAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962898
1015IT8|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.122898
1025J88|1|CAStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.322898
1034YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12898
1046I7V|1|CARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92898
1054U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
1064U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
1074U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
1084U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
1094WF1|1|DACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
1104U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
1114U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
1124U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
1134V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
1144V9C|1|BAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
1154WOI|1|CA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
1164V7U|1|DACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12841
1174V80|1|DACrystal structure of the E. coli ribosome bound to CEM-101.X-RAY DIFFRACTION3.32841
1184WWW|1|YACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12841
1194V7S|1|DACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252841
1204V7V|1|DACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292841
1214V7T|1|DACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192841
1224V6C|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192841
1234V6E|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712841
1244V6D|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812841
1254V50|1|BBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
1264V54|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
1274V4Q|1|BBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
1284V4H|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
1294V64|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
1304V53|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542841
1314V55|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42841
1324V52|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
1334V5Y|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452841
1344V57|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
1354V56|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932841
1364V5B|1|ABStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742841
1374V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1384V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1394V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1404V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1414V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1424V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1433JCJ|1|AStructures of ribosome-bound initiation factor 2 reveal the mechanism of subunit associationELECTRON MICROSCOPY3.72854
1443J7Z|1|AStructure of the E. coli 50S subunit with ErmCL nascent chainELECTRON MICROSCOPY3.92854
1456I0Y|1|ATnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelELECTRON MICROSCOPY3.22854
1464UY8|1|AMolecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.82854
1474V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1484V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
1494V85|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22853
1504V89|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)X-RAY DIFFRACTION3.72853
1516GC8|1|A50S ribosomal subunit assembly intermediate - 50S rec*ELECTRON MICROSCOPY3.82897
1526GXP|1|ACryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)ELECTRON MICROSCOPY4.42896
1536GWT|1|ACryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)ELECTRON MICROSCOPY3.82896
1546GXN|1|ACryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)ELECTRON MICROSCOPY3.92895
1556GXM|1|ACryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)ELECTRON MICROSCOPY3.82896
1565L3P|1|ACryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complexELECTRON MICROSCOPY3.72890
1575NP6|1|Y70S structure prior to bypassingELECTRON MICROSCOPY3.62903
1584V6K|1|ABStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252904
1594V6L|1|BBStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22904
1605ADY|1|BCryo-EM structures of the 50S ribosome subunit bound with HflXELECTRON MICROSCOPY4.52903
1614V7I|1|A8Ribosome-SecY complex.ELECTRON MICROSCOPY9.62903
1623JBU|1|bMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.642903
1635AKA|1|BEM structure of ribosome-SRP-FtsY complex in closed stateELECTRON MICROSCOPY5.72841
1643JBV|1|bMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.322903
1654V6T|1|BAStructure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loadingELECTRON MICROSCOPY8.32903
1664V7B|1|BAVisualization of two tRNAs trapped in transit during EF-G-mediated translocationELECTRON MICROSCOPY6.82854
1676ENJ|1|APolyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.72871
1686ENU|1|APolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.12871
1696ENF|1|ACryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.22807
1704V9C|1|DAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
1714WOI|1|BA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
1724U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
1734U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
1744U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
1754U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
1764U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
1774WF1|1|BACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
1784U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
1794U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
1804V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897
1813JCN|1|AStructures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex IELECTRON MICROSCOPY4.62897
1825LZF|1|AStructure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)ELECTRON MICROSCOPY4.62900
1836GXO|1|ACryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)ELECTRON MICROSCOPY3.92900
1844V7D|1|AAStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62897
1854V7C|1|BAStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62897
1863JA1|1|LAActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62904
1874V6Q|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)ELECTRON MICROSCOPY11.52904
1884V6R|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)ELECTRON MICROSCOPY11.52904
1894V6P|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)ELECTRON MICROSCOPY13.52904
1904V6O|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)ELECTRON MICROSCOPY14.72904
1914V6N|1|ABStructural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)ELECTRON MICROSCOPY12.12904
1924V6S|1|ABStructural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)ELECTRON MICROSCOPY13.12904
1934CSU|1|BCryo-EM structures of the 50S ribosome subunit bound with ObgEELECTRON MICROSCOPY5.52903
1944V6Z|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY122903
1954V76|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY172903
1964V77|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY172903
1974V78|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY202903
1984V73|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY152903
1994V74|1|BA70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY172903
2004V72|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY132903
2014V70|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY172903
2024V75|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY122903
2034V79|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY152903
2044V71|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY202903
2054V6Y|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY122903
2064V7A|1|BAE. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY92903
2076GC0|1|A50S ribosomal subunit assembly intermediate state 4ELECTRON MICROSCOPY3.82729
2086GBZ|1|A50S ribosomal subunit assembly intermediate state 5ELECTRON MICROSCOPY3.82789
2096GC4|1|A50S ribosomal subunit assembly intermediate state 3ELECTRON MICROSCOPY4.32586
2106GC6|1|A50S ribosomal subunit assembly intermediate state 2ELECTRON MICROSCOPY4.32092
2116GC7|1|A50S ribosomal subunit assembly intermediate state 1ELECTRON MICROSCOPY4.31901
2124V66|1|BBStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92903
2134V65|1|BBStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92903
2143BBX|1|BThe Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY102902
2154V4V|1|B0Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152740
2164V4W|1|B0Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152740
2173J8G|1|BElectron cryo-microscopy structure of EngA bound with the 50S ribosomal subunitELECTRON MICROSCOPY52874
2186HRM|1|1E. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.964450
2191C2W|1|B23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTIONELECTRON MICROSCOPY7.52904
2202RDO|1|B50S subunit with EF-G(GDPNP) and RRF boundELECTRON MICROSCOPY9.12841
2214V47|1|A0Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosomeELECTRON MICROSCOPY12.32536
2224V48|1|A0Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.52536

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2026 BGSU RNA group. Page generated in 0.0329 s