#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17P6Z|1|5 (rep)Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae 70S ribosome in untreated cellsElectron microscopy3.514932022-05-25
27PAL|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy4.714932022-05-25
37PIB|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy4.714932022-05-25
47PAK|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy5.314932022-05-25
57PHB|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy4.914932022-05-25
69SK6|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S IF1/3 tRNAElectron microscopy5.614922026-09-23
77PIT|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy5.714932022-05-25
87PI9|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy6.314932022-05-25
99SL6|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 70S eT-TC (flexible)Electron microscopy5.814932026-09-23
107PAI|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy6.714932022-05-25
117PAM|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy6.814932022-05-25
127PAO|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy714932022-05-25
139SL5|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 70S eT-TC (stable)Electron microscopy6.514932026-09-23
147PAJ|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7.314932022-05-25
159SKA|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S iT-TC (flexible)Electron microscopy6.914922026-09-23
169SL4|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 70S eT-TC (collided)Electron microscopy7.214932026-09-23
179SK5|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S IF1/3Electron microscopy7.514922026-09-23
187PHA|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.514932022-05-25
197PAR|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.214932022-05-25
207PH9|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.714932022-05-25
217PAQ|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.914932022-05-25
227PIC|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.114932022-05-25
237PI8|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy8.914932022-05-25
247PIP|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.314932022-05-25
259SK7|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S IF1/2/3Electron microscopy9.214922026-09-23
267PAH|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.514932022-05-25
277PIO|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.514932022-05-25
289SMD|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)Electron microscopy9.415072026-09-23
297PAN|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.714932022-05-25
309SKC|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S iT-TC (stable, +fidaxomicin)Electron microscopy9.514922026-09-23
319SK9|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S P-tRNAElectron microscopy9.414922026-09-23
327PIQ|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.714932022-05-25
337PHC|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy9.914932022-05-25
349SKB|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S iT-TC (stable)Electron microscopy10.214922026-09-23
359SK4|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S IF3Electron microscopy11.214922026-09-23
367PIR|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy12.114932022-05-25
379SMD|1|6Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)Electron microscopy9.422026-09-23
387PIA|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy13.614932022-05-25
397PIS|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy1514932022-05-25
407PAS|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0017770S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy1614932022-05-25
419SK2|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S empty/factorlessElectron microscopy18.314922026-09-23
429SL7|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 70S transertion-like (stable RNAP)Electron microscopy26.714932026-09-23
437OOC|1|5Small subunit ribosomal RNA16S rRNAMycoplasma pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae 30S subunit of ribosomes in chloramphenicol-treated cellsElectron microscopy3.714932022-05-25
448P7X|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cellsElectron microscopy3.0315072024-11-20
458P6P|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cellsElectron microscopy3.215072024-11-20
468P7Y|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunitElectron microscopy3.715072024-11-20
478P8B|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cellsElectron microscopy2.9322024-11-20
489SK8|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 30S IF1/2/3 tRNAElectron microscopy6.614922026-09-23
499SKF|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Model of M. pneumoniae 70S membrane complexElectron microscopy8.614932026-09-23
508P8W|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)Electron microscopy8.715072024-11-20
518P8V|1|5Small subunit ribosomal RNA16S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF00177Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)Electron microscopy8.715062024-11-20

Release history

Release4.58
Date2026-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17PAS|1|570S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY161493
27PIA|1|570S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY13.61493
37PIS|1|570S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY151493
47PIR|1|570S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY12.11493
57PHC|1|570S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.91493
67PIQ|1|570S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.71493
77PI8|1|570S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.91493
87PAH|1|570S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.51493
97PHB|1|570S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.91493
107PAL|1|570S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.71493
117P6Z|1|5Mycoplasma pneumoniae 70S ribosome in untreated cellsELECTRON MICROSCOPY3.51493
127OOC|1|5Mycoplasma pneumoniae 30S subunit of ribosomes in chloramphenicol-treated cellsELECTRON MICROSCOPY3.71493
138P8V|1|5Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)ELECTRON MICROSCOPY8.71506
148P6P|1|5Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cellsELECTRON MICROSCOPY3.21507
158P7Y|1|5Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunitELECTRON MICROSCOPY3.71507
168P7X|1|5Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cellsELECTRON MICROSCOPY3.031507
179SMD|1|5Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)ELECTRON MICROSCOPY9.41507
188P8W|1|5Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)ELECTRON MICROSCOPY8.71507
197PH9|1|570S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.71493
207PHA|1|570S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.51493
217PIP|1|570S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.31493
227PIO|1|570S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.51493
239SL4|1|5Model of M. pneumoniae 70S eT-TC (collided)ELECTRON MICROSCOPY7.21493
249SL6|1|5Model of M. pneumoniae 70S eT-TC (flexible)ELECTRON MICROSCOPY5.81493
257PAI|1|570S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.71493
269SL5|1|5Model of M. pneumoniae 70S eT-TC (stable)ELECTRON MICROSCOPY6.51493
279SKF|1|5Model of M. pneumoniae 70S membrane complexELECTRON MICROSCOPY8.61493
287PAJ|1|570S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7.31493
297PI9|1|570S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.31493
307PAK|1|570S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.31493
317PIC|1|570S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.11493
327PAO|1|570S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY71493
337PAM|1|570S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.81493
347PAN|1|570S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.71493
357PIT|1|570S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.71493
367PAQ|1|570S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.91493
377PIB|1|570S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.71493
389SKB|1|5Model of M. pneumoniae 30S iT-TC (stable)ELECTRON MICROSCOPY10.21492
399SKC|1|5Model of M. pneumoniae 30S iT-TC (stable, +fidaxomicin)ELECTRON MICROSCOPY9.51492
409SK2|1|5Model of M. pneumoniae 30S empty/factorlessELECTRON MICROSCOPY18.31492
419SKA|1|5Model of M. pneumoniae 30S iT-TC (flexible)ELECTRON MICROSCOPY6.91492
429SK6|1|5Model of M. pneumoniae 30S IF1/3 tRNAELECTRON MICROSCOPY5.61492
439SK5|1|5Model of M. pneumoniae 30S IF1/3ELECTRON MICROSCOPY7.51492
449SK4|1|5Model of M. pneumoniae 30S IF3ELECTRON MICROSCOPY11.21492
459SK8|1|5Model of M. pneumoniae 30S IF1/2/3 tRNAELECTRON MICROSCOPY6.61492
469SK9|1|5Model of M. pneumoniae 30S P-tRNAELECTRON MICROSCOPY9.41492
479SK7|1|5Model of M. pneumoniae 30S IF1/2/3ELECTRON MICROSCOPY9.21492
487PAR|1|570S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.21493
499SL7|1|5Model of M. pneumoniae 70S transertion-like (stable RNAP)ELECTRON MICROSCOPY26.71493
509SMD|1|6Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)ELECTRON MICROSCOPY9.42
518P8B|1|5Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cellsELECTRON MICROSCOPY2.932

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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