Equivalence class NR_all_88402.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7LS2|1|A2+ 7LS2|1|C2 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Mus musculus | Eukarya | RF02543 + RF00002 | 80S ribosome from mouse bound to eEF2 (Class I) | Electron microscopy | 3.1 | 3862 | 2021-11-03 |
| 2 | 6SWA|1|q+ 6SWA|1|r | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA (3612-MER), 5.8S ribosomal RNA (157-MER) | Mus musculus | Eukarya | RF02543 + RF00002 | Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1 | Electron microscopy | 3.1 | 3769 | 2020-09-30 |
| 3 | 7LS1|1|A2+ 7LS1|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Mus musculus | Eukarya | RF02543 + RF00002 | 80S ribosome from mouse bound to eEF2 (Class II) | Electron microscopy | 3.3 | 3863 | 2021-11-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_88402.1 | NR_all_38048.1 | 3.203 | (1) 6SWA|1|q+6SWA|1|r | (2) 7LS1|1|A2+7LS1|1|C2, 7LS2|1|A2+7LS2|1|C2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_88402.1 | NR_all_96091.1 | 3.216 | (3) 6SWA|1|q+6SWA|1|r, 7LS1|1|A2+7LS1|1|C2, 7LS2|1|A2+7LS2|1|C2 | (0) | (2) 7CPU|1|L5+7CPU|1|L8, 7CPV|1|L5+7CPV|1|L8 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7LS1|1|A2+ 7LS1|1|C2 | 80S ribosome from mouse bound to eEF2 (Class II) | ELECTRON MICROSCOPY | 3.3 | 3863 | |
| 2 | 7LS2|1|A2+ 7LS2|1|C2 | 80S ribosome from mouse bound to eEF2 (Class I) | ELECTRON MICROSCOPY | 3.1 | 3862 | |
| 3 | 6SWA|1|q+ 6SWA|1|r | Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1 | ELECTRON MICROSCOPY | 3.1 | 3769 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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