RNA 3D Hub //

Equivalence class NR_all_89181.10 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19B1Y|1|U (rep)5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001WT strain WT mycobacterial ribosomeElectron microscopy2.471182025-03-26
29B24|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001WT strain gidB mutant mycobacterial ribosomeElectron microscopy2.471182025-03-26
38VPK|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-EryElectron microscopy2.631182025-04-30
48FR8|1|B5S ribosomal RNA5S rRNA (118-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.761182023-05-17
58VR4|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryElectron microscopy2.81182025-02-19
68WHX|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.81172024-02-28
78WHY|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.Electron microscopy2.71172024-02-28
88WI8|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.Electron microscopy2.71182024-02-28
98V9L|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy31182024-02-07
107S0S|1|i5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitElectron microscopy3.051182022-03-30
119B1X|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001HWS19 strain gidB mutant mycobacterial ribosomeElectron microscopy3.071182025-03-26
128V9J|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.11182024-02-07
138V9K|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.11182024-02-07
148VKI|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CElectron microscopy2.961182025-02-19
155XYM|1|B5S ribosomal RNA5S RNAMycolicibacterium smegmatisBacteriaRF00001Large subunit of Mycobacterium smegmatisElectron microscopy3.081162017-09-27
168VK7|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BElectron microscopy3.091142025-02-19
175O60|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Structure of the 50S large ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.181182017-07-12
188VK0|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AElectron microscopy3.141182025-02-19
198VIO|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis HflX bound to a 70S ribosomeElectron microscopy3.261182025-02-19
209B1W|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001HWS19 strain WT mycobacterial ribosomeElectron microscopy3.261182025-03-26
218KAB|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit-HflX complexElectron microscopy3.31182024-07-31
228VRL|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmElectron microscopy3.331182025-02-19
235O61|1|B5S ribosomal RNA5S rRNAMycobacterium smegmatisBacteriaRF00001The complete structure of the Mycobacterium smegmatis 70S ribosomeElectron microscopy3.311182017-07-12
248VKW|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXElectron microscopy3.441182025-02-19
258VR8|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmElectron microscopy3.251182025-02-19
267XAM|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthElectron microscopy3.51182023-05-03
278WI7|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.51182024-02-28
288WIB|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.51172024-02-28
296DZP|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitElectron microscopy3.421182018-10-03
306DZI|1|B5S ribosomal RNA5S RNA (118-MER)Mycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.461182018-09-26
319K10|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001EF-G2 bound 50S ribosome subunit complex of M. smegmatisElectron microscopy3.61182025-07-09
328WIC|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.51172024-02-28
338XZ3|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit with ErythromycinElectron microscopy3.61182024-07-31
347Y41|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growthElectron microscopy4.11182023-05-03
359K0Z|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001EF-G2 bound 70S ribosome complex of M. smegmatisElectron microscopy4.71182025-07-09

Release history

Release3.395
Date2025-07-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18VPK|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-EryELECTRON MICROSCOPY2.63118
29B1Y|1|UWT strain WT mycobacterial ribosomeELECTRON MICROSCOPY2.47118
39B24|1|UWT strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY2.47118
49B1W|1|UHWS19 strain WT mycobacterial ribosomeELECTRON MICROSCOPY3.26118
59B1X|1|UHWS19 strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY3.07118
68V9K|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.1118
78V9J|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.1118
88V9L|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY3118
98VIO|1|BStructure of Mycobacterium smegmatis HflX bound to a 70S ribosomeELECTRON MICROSCOPY3.26118
109K10|1|BEF-G2 bound 50S ribosome subunit complex of M. smegmatisELECTRON MICROSCOPY3.6118
117XAM|1|BMycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthELECTRON MICROSCOPY3.5118
129K0Z|1|BEF-G2 bound 70S ribosome complex of M. smegmatisELECTRON MICROSCOPY4.7118
138XZ3|1|BMycobacterium smegmatis 50S ribosomal subunit with ErythromycinELECTRON MICROSCOPY3.6118
147Y41|1|BMycobacterium smegmatis 50S ribosomal subunit from Log Phase of growthELECTRON MICROSCOPY4.1118
158KAB|1|BMycobacterium smegmatis 50S ribosomal subunit-HflX complexELECTRON MICROSCOPY3.3118
168WHX|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.8117
178WHY|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.7117
188WIB|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.5117
198WIC|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.5117
208WI7|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.5118
218WI8|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY2.7118
227S0S|1|iM. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.05118
238VKI|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CELECTRON MICROSCOPY2.96118
248VK7|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BELECTRON MICROSCOPY3.09114
258VR4|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryELECTRON MICROSCOPY2.8118
265O60|1|BStructure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.18118
275O61|1|BThe complete structure of the Mycobacterium smegmatis 70S ribosomeELECTRON MICROSCOPY3.31118
286DZI|1|BCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.46118
296DZP|1|BCryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.42118
305XYM|1|BLarge subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.08116
318VR8|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmELECTRON MICROSCOPY3.25118
328VRL|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmELECTRON MICROSCOPY3.33118
338VK0|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AELECTRON MICROSCOPY3.14118
348VKW|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXELECTRON MICROSCOPY3.44118
358FR8|1|BStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.76118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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