RNA 3D Hub //

Equivalence class NR_all_89181.7 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19J1M|1|B (rep)5S ribosomal RNA5S rRNAMycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2BacteriaRF00001KU13-bond Mycobacterium tuberculosis 70S ribosomeElectron microscopy2.331152025-03-19
29B1Y|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001WT strain WT mycobacterial ribosomeElectron microscopy2.471182025-03-26
39B24|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001WT strain gidB mutant mycobacterial ribosomeElectron microscopy2.471182025-03-26
48FR8|1|B5S ribosomal RNA5S rRNA (118-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.761182023-05-17
58VR4|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryElectron microscopy2.81182025-02-19
68WHX|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.81172024-02-28
78WHY|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.Electron microscopy2.71172024-02-28
88WI8|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.Electron microscopy2.71182024-02-28
98V9L|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy31182024-02-07
107S0S|1|i5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitElectron microscopy3.051182022-03-30
119B1X|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001HWS19 strain gidB mutant mycobacterial ribosomeElectron microscopy3.071182025-03-26
128V9K|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.11182024-02-07
138V9J|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.11182024-02-07
148VKI|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CElectron microscopy2.961182025-02-19
155XYM|1|B5S ribosomal RNA5S RNAMycolicibacterium smegmatisBacteriaRF00001Large subunit of Mycobacterium smegmatisElectron microscopy3.081162017-09-27
168VK7|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BElectron microscopy3.091142025-02-19
175O60|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Structure of the 50S large ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.181182017-07-12
188VK0|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AElectron microscopy3.141182025-02-19
198VIO|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis HflX bound to a 70S ribosomeElectron microscopy3.261182025-02-19
209B1W|1|U5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001HWS19 strain WT mycobacterial ribosomeElectron microscopy3.261182025-03-26
218KAB|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit-HflX complexElectron microscopy3.31182024-07-31
228VRL|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmElectron microscopy3.331182025-02-19
235O61|1|B5S ribosomal RNA5S rRNAMycobacterium smegmatisBacteriaRF00001The complete structure of the Mycobacterium smegmatis 70S ribosomeElectron microscopy3.311182017-07-12
248VKW|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXElectron microscopy3.441182025-02-19
258VR8|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmElectron microscopy3.251182025-02-19
267XAM|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthElectron microscopy3.51182023-05-03
278WI7|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.51182024-02-28
288WIB|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.51172024-02-28
296DZP|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitElectron microscopy3.421182018-10-03
306DZI|1|B5S ribosomal RNA5S RNA (118-MER)Mycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.461182018-09-26
318WIC|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.51172024-02-28
328XZ3|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit with ErythromycinElectron microscopy3.61182024-07-31
337Y41|1|B5S ribosomal RNA5S ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growthElectron microscopy4.11182023-05-03

Release history

Release3.3803.381
Date2025-03-262025-04-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19J1M|1|BKU13-bond Mycobacterium tuberculosis 70S ribosomeELECTRON MICROSCOPY2.33115
25O60|1|BStructure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.18118
35O61|1|BThe complete structure of the Mycobacterium smegmatis 70S ribosomeELECTRON MICROSCOPY3.31118
46DZP|1|BCryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.42118
56DZI|1|BCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.46118
65XYM|1|BLarge subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.08116
79B1Y|1|UWT strain WT mycobacterial ribosomeELECTRON MICROSCOPY2.47118
89B24|1|UWT strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY2.47118
99B1W|1|UHWS19 strain WT mycobacterial ribosomeELECTRON MICROSCOPY3.26118
109B1X|1|UHWS19 strain gidB mutant mycobacterial ribosomeELECTRON MICROSCOPY3.07118
118V9K|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.1118
128V9J|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.1118
138V9L|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY3118
148VIO|1|BStructure of Mycobacterium smegmatis HflX bound to a 70S ribosomeELECTRON MICROSCOPY3.26118
157XAM|1|BMycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthELECTRON MICROSCOPY3.5118
168XZ3|1|BMycobacterium smegmatis 50S ribosomal subunit with ErythromycinELECTRON MICROSCOPY3.6118
177Y41|1|BMycobacterium smegmatis 50S ribosomal subunit from Log Phase of growthELECTRON MICROSCOPY4.1118
188KAB|1|BMycobacterium smegmatis 50S ribosomal subunit-HflX complexELECTRON MICROSCOPY3.3118
198WI8|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY2.7118
208WI7|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.5118
218WIC|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.5117
228WIB|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.5117
238WHY|1|BCryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.7117
248WHX|1|BCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.8117
257S0S|1|iM. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.05118
268VKI|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-CELECTRON MICROSCOPY2.96118
278VR4|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-EryELECTRON MICROSCOPY2.8118
288VK7|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-BELECTRON MICROSCOPY3.09114
298VR8|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-ClmELECTRON MICROSCOPY3.25118
308VRL|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-ClmELECTRON MICROSCOPY3.33118
318VK0|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-AELECTRON MICROSCOPY3.14118
328VKW|1|BStructure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflXELECTRON MICROSCOPY3.44118
338FR8|1|BStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.76118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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