Equivalence class NR_all_89429.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4FE5|1|B (rep) | xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.32 | 2012-06-27 | ||||
| 2 | 3FO4|1|A | Guanine riboswitch C74U mutant | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||||
| 3 | 3GOG|1|A | Guanine riboswitch | Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine | X-ray diffraction | 2.1 | 2009-06-23 | ||||
| 4 | 2XNZ|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-ray diffraction | 1.59 | 2011-04-06 |
| 5 | 2EEV|1|A | guanine riboswitch | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||||
| 6 | 2G9C|1|A | guanine riboswitch | Modified pyrimidines Specifically bind the purine riboswitch | X-ray diffraction | 1.7 | 2006-11-21 | ||||
| 7 | 3FO6|1|A | Guanine riboswitch | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||||
| 8 | 3GAO|1|A | Guanine riboswitch | Crystal structure of the guanine riboswitch bound to xanthine. | X-ray diffraction | 1.9 | 2009-06-23 | ||||
| 9 | 3GER|1|A | Guanine riboswitch | Guanine riboswitch bound to 6-chloroguanine | X-ray diffraction | 1.7 | 2009-06-23 | ||||
| 10 | 2EET|1|A | Guanine Riboswitch | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||||
| 11 | 4FEN|1|B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.35 | 2013-02-27 | ||||
| 12 | 4FEO|1|B | U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.6 | 2013-02-27 | ||||
| 13 | 4FEP|1|B | A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.65 | 2013-02-27 | ||||
| 14 | 2EEW|1|A | Guanine riboswitch | Guanine Riboswitch U47C mutant bound to hypoxanthine | X-ray diffraction | 2.25 | 2007-11-13 | ||||
| 15 | 2EES|1|A | Guanine riboswitch | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-ray diffraction | 1.75 | 2007-11-13 | ||||
| 16 | 2EEU|1|A | Guanine riboswitch | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||||
| 17 | 3GES|1|A | Guanine riboswitch | Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine | X-ray diffraction | 2.15 | 2009-06-23 | ||||
| 18 | 3DS7|1|A | 67-MER | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||||
| 19 | 4FEJ|1|B | A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.5 | 2013-02-27 | ||||
| 20 | 5C7U|1|B | Purine riboswitch | 5'-monophosphate wt guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine. | X-ray diffraction | 3.05 | 2015-08-12 |
| 21 | 3DS7|1|B | 67-MER | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||||
| 22 | 4FEL|1|B | U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.6 | 2013-02-27 | ||||
| 23 | 2XO0|1|A | Purine riboswitch | GUANINE RIBOSWITCH | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening | X-ray diffraction | 1.7 | 2011-04-06 |
| 24 | 2XNW|1|A | Purine riboswitch | GUANINE RIBOSWITCH | Bacillus subtilis | Bacteria | RF00167 | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-ray diffraction | 1.5 | 2011-04-06 |
| 25 | 2XO1|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-ray diffraction | 1.6 | 2011-04-06 |
| 26 | 3GOT|1|A | Guanine riboswitch | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-ray diffraction | 1.95 | 2009-06-23 | ||||
| 27 | 3G4M|1|A | Guanine riboswitch | Crystal structure of guanine riboswitch bound to 2-aminopurine | X-ray diffraction | 2.4 | 2009-06-23 | ||||
| 28 | 2B57|1|A | 65-MER | Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine | X-ray diffraction | 2.15 | 2006-05-23 | ||||
| 29 | 5C7W|1|C | 5'-monophosphate Z:P guanine riboswitch | synthetic construct | 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine. | X-ray diffraction | 3.22 | 2015-08-12 |
Release history
| Release | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 |
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| Date | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_89429.2 | NR_all_89429.1 | 2.36 | (27) 2B57|1|A, 2EES|1|A, 2EET|1|A, 2EEU|1|A, 2EEV|1|A, 2EEW|1|A, 2G9C|1|A, 2XNW|1|A, 2XNZ|1|A, 2XO0|1|A, 2XO1|1|A, 3DS7|1|A, 3DS7|1|B, 3FO4|1|A, 3FO6|1|A, 3G4M|1|A, 3GAO|1|A, 3GER|1|A, 3GES|1|A, 3GOG|1|A, 3GOT|1|A, 4FE5|1|B, 4FEJ|1|B, 4FEL|1|B, 4FEN|1|B, 4FEO|1|B, 4FEP|1|B | (2) 5C7U|1|B, 5C7W|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_89429.2 | NR_all_89429.3 | 3.0 | (28) 2B57|1|A, 2EES|1|A, 2EET|1|A, 2EEU|1|A, 2EEV|1|A, 2EEW|1|A, 2G9C|1|A, 2XNW|1|A, 2XNZ|1|A, 2XO1|1|A, 3DS7|1|A, 3DS7|1|B, 3FO4|1|A, 3FO6|1|A, 3G4M|1|A, 3GAO|1|A, 3GER|1|A, 3GES|1|A, 3GOG|1|A, 3GOT|1|A, 4FE5|1|B, 4FEJ|1|B, 4FEL|1|B, 4FEN|1|B, 4FEO|1|B, 4FEP|1|B, 5C7U|1|B, 5C7W|1|C | (1) 2XO0|1|A | (1) 1U8D|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3DS7|1|B | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 | |
| 2 | 3DS7|1|A | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 | |
| 3 | 2EEV|1|A | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 | |
| 4 | 3GES|1|A | Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine | X-RAY DIFFRACTION | 2.15 | 67 | |
| 5 | 2XO0|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening | X-RAY DIFFRACTION | 1.7 | 65 | |
| 6 | 3GAO|1|A | Crystal structure of the guanine riboswitch bound to xanthine. | X-RAY DIFFRACTION | 1.9 | 67 | |
| 7 | 2XNW|1|A | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-RAY DIFFRACTION | 1.5 | 65 | |
| 8 | 2EEU|1|A | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 | |
| 9 | 2EEW|1|A | Guanine Riboswitch U47C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 2.25 | 67 | |
| 10 | 3FO6|1|A | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-RAY DIFFRACTION | 1.9 | 67 | |
| 11 | 3GOG|1|A | Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 2.1 | 65 | |
| 12 | 2EET|1|A | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 | |
| 13 | 4FEJ|1|B | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.5 | 67 | |
| 14 | 2G9C|1|A | Modified pyrimidines Specifically bind the purine riboswitch | X-RAY DIFFRACTION | 1.7 | 67 | |
| 15 | 2XNZ|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-RAY DIFFRACTION | 1.59 | 65 | |
| 16 | 4FE5|1|B | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.32 | 67 | |
| 17 | 2XO1|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-RAY DIFFRACTION | 1.6 | 65 | |
| 18 | 3GER|1|A | Guanine riboswitch bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.7 | 67 | |
| 19 | 3FO4|1|A | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.9 | 63 | |
| 20 | 2EES|1|A | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.75 | 67 | |
| 21 | 3GOT|1|A | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-RAY DIFFRACTION | 1.95 | 67 | |
| 22 | 2B57|1|A | Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine | X-RAY DIFFRACTION | 2.15 | 65 | |
| 23 | 3G4M|1|A | Crystal structure of guanine riboswitch bound to 2-aminopurine | X-RAY DIFFRACTION | 2.4 | 67 | |
| 24 | 4FEO|1|B | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.6 | 67 | |
| 25 | 4FEL|1|B | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.6 | 67 | |
| 26 | 4FEP|1|B | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.65 | 67 | |
| 27 | 4FEN|1|B | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.35 | 67 | |
| 28 | 5C7U|1|B | 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine. | X-RAY DIFFRACTION | 3.05 | 67 | |
| 29 | 5C7W|1|C | 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine. | X-RAY DIFFRACTION | 3.22 | 65 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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