RNA 3D Hub //

Equivalence class NR_all_90506.83 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18CEH|1|AA+ 8CEH|1|CC (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.0533552023-09-20
28CDR|1|AA+ 8CDR|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.0433552023-09-20
38T2Y|1|A1+ 8T2Y|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREElectron microscopy2.233172024-12-11
48PFR|1|A+ 8PFR|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Mouse RPL39L integrated into the yeast 60S ribosomal subunitElectron microscopy2.1531962024-06-26
57ZW0|1|LA+ 7ZW0|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1)Saccharomyces cerevisiae W303EukaryaRF02543 + RF00002FAP-80S Complex - Rotated stateElectron microscopy2.433752022-10-05
68P8N|1|A+ 8P8N|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Mouse RPL39 integrated into the yeast 60S ribosomal subunitElectron microscopy2.1532002024-06-12
78EVT|1|A1+ 8EVT|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.233502023-09-06
88P8U|1|A+ 8P8U|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunitElectron microscopy2.2332032024-06-12
98BN3|1|1+ 8BN3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.433012024-01-10
108T2Z|1|A1+ 8T2Z|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTElectron microscopy2.433192024-12-11
118AGX|1|f+ 8AGX|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.433742023-03-08
128EVP|1|A1+ 8EVP|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.3833562023-09-06
138T2X|1|A1+ 8T2X|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREElectron microscopy2.4633742024-12-11
148EWC|1|A1+ 8EWC|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.4533562023-09-06
158AAF|1|f+ 8AAF|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state GElectron microscopy2.533742023-03-08
168AGT|1|f+ 8AGT|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state FElectron microscopy2.633742023-03-08
178CGN|1|AA+ 8CGN|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.2833552023-09-20
188AGZ|1|f+ 8AGZ|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.633742023-03-08
198AGV|1|f+ 8AGV|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state HElectron microscopy2.633742023-03-08
206T4Q|1|C1+ 6T4Q|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.633422019-12-25
218EVS|1|A1+ 8EVS|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIElectron microscopy2.6233562023-09-06
228AGW|1|f+ 8AGW|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state DElectron microscopy2.633742023-03-08
237UQB|1|1+ 7UQB|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.4331492023-03-15
248AGU|1|f+ 8AGU|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state EElectron microscopy2.733742023-03-08
258ZHC|1|LA+ 8ZHC|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF00002pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVElectron microscopy2.333422025-05-21
268EVQ|1|A1+ 8EVQ|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IElectron microscopy2.7233562023-09-06
278HFR|1|1e+ 8HFR|1|3nLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002NPC-trapped pre-60S particleElectron microscopy2.6434302023-04-12
289F9S|1|M1+ 9F9S|1|M2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications, Saccharomyces cerevisiae S288C 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast SDD1 Disome with Mbf1Electron microscopy2.933482024-12-04
297V08|1|1+ 7V08|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.3631442023-03-15
307MPJ|1|A1+ 7MPJ|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.732952022-05-11
318EWB|1|A1+ 8EWB|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIElectron microscopy2.8733562023-09-06
327UOO|1|1+ 7UOO|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.3431492023-03-15
337TOO|1|A25S+ 7TOO|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.733522022-05-25
347ZUX|1|5+ 7ZUX|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.533212023-02-22
357TOP|1|A25S+ 7TOP|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.433522022-05-25
369F9S|1|L1+ 9F9S|1|L2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), Saccharomyces cerevisiae S288C 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast SDD1 Disome with Mbf1Electron microscopy2.932742024-12-04
377N8B|1|A1+ 7N8B|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S, 5.8SSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cycloheximide bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.0533142022-05-11
386TB3|1|BQ+ 6TB3|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.833812020-04-22
398EVR|1|A1+ 8EVR|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy2.8733562023-09-06
408P9A|1|AR+ 8P9A|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8 ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.932882024-11-27
418CG8|1|AA+ 8CG8|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.5733552023-09-20
428P8M|1|A+ 8P8M|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit, RPL39 deletionElectron microscopy2.6631932024-06-12
438P9A|1|1+ 8P9A|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8 ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with MethyllissoclimideX-ray diffraction2.933072024-11-27
447MPI|1|A1+ 7MPI|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Stm1 bound vacant 80S structure isolated from cbf5-D95AElectron microscopy3.0532952022-05-11
456SNT|1|1+ 6SNT|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.833422020-03-04
468ZH3|1|LA+ 8ZH3|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with A/P-P/E tRNA and mRNA of WNVElectron microscopy2.733422025-05-21
477UQZ|1|1+ 7UQZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.4431442023-03-15
488CF5|1|AA+ 8CF5|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.7133482023-09-20
498T30|1|A1+ 8T30|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedElectron microscopy2.8833172024-12-11
508ZGY|1|LA+ 8ZGY|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with P/E tRNA and mRNA of WNVElectron microscopy2.833422025-05-21
517ZPQ|1|5+ 7ZPQ|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)Electron microscopy3.4733422023-02-22
525TBW|1|1+ 5TBW|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
538ZHB|1|LA+ 8ZHB|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with A/A P/E tRNA and mRNA of WNVElectron microscopy2.633422025-05-21
545TBW|1|AR+ 5TBW|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
558T3A|1|A1+ 8T3A|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2Electron microscopy2.8633722024-12-11
568K82|1|C1+ 8K82|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA23S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAElectron microscopy333622024-07-10
579R9O|1|C1+ 9R9O|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 stateElectron microscopy2.932212025-12-24
588PNN|1|AR+ 8PNN|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.932942025-05-28
594V88|1|A5+ 4V88|1|A8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333082014-07-09
604V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333072014-07-09
618PNN|1|1+ 8PNN|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with BromolissoclimideX-ray diffraction2.933072025-05-28
628T3D|1|A1+ 8T3D|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIElectron microscopy2.9533742024-12-11
638EUB|1|A1+ 8EUB|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IElectron microscopy2.5233562023-09-06
646YLG|1|1+ 6YLG|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy331932020-07-29
658P4V|1|AR+ 8P4V|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.1633052024-10-16
668P4V|1|1+ 8P4V|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with HaterumaimideQX-ray diffraction3.1633072024-10-16
676Q8Y|1|BQ+ 6Q8Y|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.133192019-03-13
688ZGR|1|LA+ 8ZGR|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3393-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF0000280S ribosome with A/A tRNA and mRNA of WNVElectron microscopy2.733422025-05-21
697AZY|1|E+ 7AZY|1|GLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.87733192021-05-19
708K2D|1|C1+ 8K2D|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA23S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AElectron microscopy3.233452024-07-10
716XIR|1|1+ 6XIR|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA35S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.232712020-08-26
728P85|1|AR+ 8P85|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.933052025-06-25
736T7I|1|C1+ 6T7I|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.233422019-12-25
748P85|1|1+ 8P85|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S yeast ribosome in complex with FluorolissoclimideX-ray diffraction2.932922025-06-25
759R9P|1|C1+ 9R9P|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 stateElectron microscopy332212025-12-24
766TNU|1|BQ+ 6TNU|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.133422020-04-22
776T7T|1|C1+ 6T7T|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.133422019-12-25
788BIP|1|1+ 8BIP|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.134592023-02-08
797OSA|1|25S+ 7OSA|1|58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction333382021-12-08
805I4L|1|5+ 5I4L|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133082016-06-22
816RZZ|1|A+ 6RZZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.233022019-06-26
828UTI|1|A+ 8UTI|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Eukaryotic 80S ribosome with Reh1 and A/P site tRNAElectron microscopy3.1332022024-11-06
838T3E|1|A1+ 8T3E|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVElectron microscopy3.0433742024-12-11
845I4L|1|1+ 5I4L|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133072016-06-22
859OFV|1|f+ 9OFV|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexElectron microscopy3.1633742025-06-11
866Z6K|1|C1+ 6Z6K|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.432842020-07-29
875MEI|1|AR+ 5MEI|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
886QIK|1|A+ 6QIK|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.133022019-06-26
895MEI|1|1+ 5MEI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
907U0H|1|1+ 7U0H|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall modelElectron microscopy2.7628802022-12-14
918T3F|1|A1+ 8T3F|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VElectron microscopy3.0933742024-12-11
926HHQ|1|AR+ 6HHQ|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133052019-02-20
935OBM|1|5+ 5OBM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432922017-12-13
946HHQ|1|1+ 6HHQ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133072019-02-20
958T3B|1|A1+ 8T3B|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IElectron microscopy3.0833742024-12-11
965OBM|1|1+ 5OBM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432562017-12-13
978UT0|1|A+ 8UT0|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAElectron microscopy3.2233422024-11-06
986N8O|1|A+ 6N8O|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.533592019-03-13
996WOO|1|5+ 6WOO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.934282020-09-23
1007BT6|1|1+ 7BT6|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN5.8-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)Electron microscopy3.1231202020-10-28
1017RR5|1|C1+ 7RR5|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of ribosomal complex bound with Rbg1/Tma46Electron microscopy3.2333792021-11-10
1026YLH|1|1+ 6YLH|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Rix1-Rea1 pre-60S particle - full composite structureElectron microscopy3.131932020-07-29
1035LYB|1|5+ 5LYB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533082016-11-23
1045NDV|1|1+ 5NDV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332352017-12-13
1056R87|1|1+ 6R87|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.434742019-06-26
1065ON6|1|1+ 5ON6|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
1077B7D|1|LA+ 7B7D|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.333812021-03-10
1085LYB|1|1+ 5LYB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533072016-11-23
1096M62|1|1+ 6M62|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.231302020-08-26
1106N8M|1|A+ 6N8M|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.533612019-03-13
1115ON6|1|AR+ 5ON6|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
1126R86|1|1+ 6R86|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.434182019-07-31
1137ZS5|1|1+ 7ZS5|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNAElectron microscopy3.234062023-02-22
1145NDV|1|5+ 5NDV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332452017-12-13
1157R7A|1|1+ 7R7A|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002State E1 nucleolar 60S ribosome biogenesis intermediate - Composite modelElectron microscopy3.0427292022-11-09
1166S47|1|AA+ 6S47|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.2833072019-07-24
1177BTB|1|1+ 7BTB|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN5.8-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.2232162020-10-28
1187OHQ|1|1+ 7OHQ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeElectron microscopy3.132112021-11-03
1196N8J|1|1+ 6N8J|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.532052019-03-13
1205NDW|1|5+ 5NDW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.732382017-12-13
1215NDW|1|1+ 5NDW|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.732482017-12-13
1227NAC|1|1+ 7NAC|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite modelElectron microscopy3.0428192022-11-09
1236QT0|1|A+ 6QT0|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.433202019-06-26
1246N8L|1|1+ 6N8L|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitElectron microscopy3.633582019-03-13
1257OSM|1|25S+ 7OSM|1|58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction333202021-12-08
1266Z6J|1|C1+ 6Z6J|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.432842020-07-29
1277ZUW|1|5+ 7ZUW|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiaeElectron microscopy4.333212023-02-22
1288Z70|1|A+ 8Z70|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingElectron microscopy3.233452024-12-11
1296N8K|1|1+ 6N8K|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitElectron microscopy3.633582019-03-13
1306R84|1|1+ 6R84|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)Electron microscopy3.634742019-06-26
1317ZRS|1|5+ 7ZRS|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite mapElectron microscopy4.833432023-02-22
1325M1J|1|14+ 5M1J|1|44Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.334532017-01-18
1333JCT|1|1+ 3JCT|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.0832162016-06-01
1346RI5|1|A+ 6RI5|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S RNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.333032019-06-26
1357UG6|1|1+ 7UG6|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922Electron microscopy2.932162022-12-21
1366SV4|1|YQ+ 6SV4|1|YSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
1376T83|1|1b+ 6T83|1|3bLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy433422019-12-25
1387OF1|1|1+ 7OF1|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeElectron microscopy3.129452021-11-03
1395FCJ|1|5+ 5FCJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.133082016-05-11
1408Y0U|1|C1+ 8Y0U|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002dormant ribosome with STM1Electron microscopy3.5933792024-02-07
1417OH3|1|1+ 7OH3|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeElectron microscopy3.431682021-11-03
1425FCJ|1|1+ 5FCJ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.133072016-05-11
1435APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.4132702015-12-16
1447NRC|1|LA+ 7NRC|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3184-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AElectron microscopy3.933422021-05-05
1456N8N|1|A+ 6N8N|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitElectron microscopy3.833612019-03-13
1468XU8|1|A+ 8XU8|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationElectron microscopy3.433472024-12-11
1478V87|1|1+ 8V87|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF0000260S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)Electron microscopy2.6626442024-05-01
1485NDG|1|5+ 5NDG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.732842017-12-13
1498BJQ|1|1+ 8BJQ|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexElectron microscopy3.834592023-02-08
1508V83|1|1+ 8V83|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae S288C 25S ribosomal RNA, Saccharomyces cerevisiae S288C 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF0000260S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)Electron microscopy2.5321652024-05-01
1516SV4|1|ZQ+ 6SV4|1|ZSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
1525NDG|1|1+ 5NDG|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.732362017-12-13
1536GQV|1|1+ 6GQV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)Electron microscopy433812018-07-11
1546FT6|1|1+ 6FT6|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 7S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsElectron microscopy3.932202018-03-28
1555JUP|1|B+ 5JUP|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.534672016-10-05
1566GQB|1|1+ 6GQB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)Electron microscopy3.933812018-07-11
1576HD7|1|1+ 6HD7|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.434932018-12-19
1586T83|1|Aa+ 6T83|1|CaLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy432842019-12-25
1597Z34|1|1+ 7Z34|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA35S pre-ribosomal RNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Structure of pre-60S particle bound to DRG1(AFG2)Electron microscopy3.835042022-09-21
1605APN|1|5+ 5APN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.9132702015-12-16
1616OIG|1|5+ 6OIG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Subunit joining exposes nascent pre-40S rRNA for processing and quality controlElectron microscopy3.834012020-09-30
1628BQX|1|BQ+ 8BQX|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome in complex with Map1 (conformation 2)Electron microscopy3.834592023-03-22
1636YLY|1|1+ 6YLY|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002pre-60S State NE2 (TAP-Flag-Nop53)Electron microscopy3.828342020-07-29
1645MC6|1|BQ+ 5MC6|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.833232017-01-18
1658T3C|1|A1+ 8T3C|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIElectron microscopy3.8633742024-12-11
1668YLR|1|A+ 8YLR|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationElectron microscopy3.933502024-12-11
1678BQD|1|BQ+ 8BQD|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome in complex with Map1 (conformation 1)Electron microscopy3.934572023-03-22
1688V84|1|1+ 8V84|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNASaccharomyces cerevisiae 25S ribosomal RNA, Saccharomyces cerevisiae 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF0000260S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)Electron microscopy2.721202024-05-01
1696SV4|1|BQ+ 6SV4|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
1706ELZ|1|1+ 6ELZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.326152017-12-27
1716XIQ|1|1+ 6XIQ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA35S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressElectron microscopy4.233812020-08-26
1726GQ1|1|1+ 6GQ1|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)Electron microscopy4.433812018-07-11
1737NRD|1|LA+ 7NRD|1|LCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA (3184-MER), 5.8S rRNA (158-MER)Saccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAElectron microscopy4.3633422021-04-14
1747OHX|1|1+ 7OHX|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AElectron microscopy3.317092021-11-03
1758YLD|1|A+ 8YLD|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationElectron microscopy3.933512024-12-11
1766YLX|1|1+ 6YLX|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002pre-60S State NE1 (TAP-Flag-Nop53)Electron microscopy3.926922020-07-29
1775TGM|1|1+ 5TGM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533072017-01-18
1785TGM|1|5+ 5TGM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533082017-01-18
1797OHU|1|1+ 7OHU|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population BElectron microscopy3.718402021-11-03
1807OHV|1|1+ 7OHV|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CElectron microscopy3.922962021-11-03
1816EM1|1|1+ 6EM1|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.619432017-12-27
1825T6R|1|A+ 5T6R|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexElectron microscopy4.233622017-02-08
1835JUT|1|B+ 5JUT|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy434672016-10-05
1845H4P|1|1+ 5H4P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.0732492017-01-25
1857OHW|1|1+ 7OHW|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BElectron microscopy3.517882021-11-03
1867OHY|1|1+ 7OHY|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population BElectron microscopy3.918372021-11-03
1878Z71|1|A+ 8Z71|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decodingElectron microscopy3.633452024-12-11
1887OHP|1|1+ 7OHP|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AElectron microscopy3.917162021-11-03
1897OHR|1|1+ 7OHR|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population E from S. cerevisiaeElectron microscopy4.7225312021-11-10
1906C0F|1|1+ 6C0F|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast nucleolar pre-60S ribosomal subunit (state 2)Electron microscopy3.715152018-03-14
1916EM3|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.212502017-12-27
1925JUO|1|B+ 5JUO|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy434672016-10-05
1936EM5|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.324382017-12-27
1944V8Y|1|B5+ 4V8Y|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy4.333052014-07-09
1956I7O|1|YQ+ 6I7O|1|YSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.332842019-01-16
1966I7O|1|BQ+ 6I7O|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.332842019-01-16
1977OHS|1|1+ 7OHS|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543 + RF00002Nog1-TAP associated immature ribosomal particle population F from S. cerevisiaeElectron microscopy4.3818442021-11-03
1985JUS|1|B+ 5JUS|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)Electron microscopy4.234672016-10-05
1996EM4|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.115562017-12-27
2003J6Y|1|2S+ 3J6Y|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.134662014-06-11
2013J6X|1|2S+ 3J6X|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.134662014-06-11
2027OHT|1|1Large subunit ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CEukaryaRF02543Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population AElectron microscopy4.714852021-11-03
2039QJC|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543Yeast pre-60S Domain II intermediateElectron microscopy3.25092026-01-28
2043J77|1|2S+ 3J77|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)Electron microscopy6.234452014-08-06
2053J78|1|2S+ 3J78|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)Electron microscopy6.334602014-08-06
2065Z3G|1|A+ 5Z3G|1|BLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)Electron microscopy3.6516572018-04-11
2078E5T|1|1+ 8E5T|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediateElectron microscopy48812023-04-12
2086CB1|1|1+ 6CB1|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA35S pre-ribosomal RNA miscRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast nucleolar pre-60S ribosomal subunit (state 3)Electron microscopy4.615282018-03-14
2094V8Z|1|B5+ 4V8Z|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy6.633052014-07-09
2104V8T|1|5+ 4V8T|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1Electron microscopy8.133082014-07-09
2114V7F|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543Arx1 pre-60S particle.Electron microscopy8.733942014-07-09
2125GAK|1|1+ 5GAK|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.8833232016-02-24
2135JCS|1|xLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.533942016-11-16
2144V6I|1|DA+ 4V6I|1|DBLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.835112014-07-09
2154V7R|1|B1+ 4V7R|1|B3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction433642014-07-09
2164V7R|1|D1+ 4V7R|1|D3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction433642014-07-09
2175DGV|1|5+ 5DGV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133072016-12-14
2185DAT|1|5+ 5DAT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533272016-08-31
2195DGV|1|1+ 5DGV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133062016-12-14
2205DAT|1|1+ 5DAT|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533072016-08-31
2215DGE|1|5+ 5DGE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533082017-01-25
2225DGF|1|5+ 5DGF|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333272016-12-14
2235DGF|1|1+ 5DGF|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333072016-12-14
2245DGE|1|1+ 5DGE|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533072017-01-25
2255DC3|1|5+ 5DC3|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533272016-06-01
2265TGA|1|5+ 5TGA|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333082016-11-23
2275TGA|1|1+ 5TGA|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333072016-11-23
2285DC3|1|1+ 5DC3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533072016-06-01
2295FCI|1|5+ 5FCI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.433082016-05-11
2305FCI|1|1+ 5FCI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.433072016-05-11
2318CCS|1|AA+ 8CCS|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.9733482023-09-20
2328CIV|1|AA+ 8CIV|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.4733552023-09-20
2335JUU|1|B+ 5JUU|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy434652016-10-05
2346S05|1|A+ 6S05|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.933022019-06-26
2354U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833072014-10-22
2364U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833082014-10-22
2374U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933082014-10-22
2384U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933072014-10-22
2394U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
2404U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
2414U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
2424U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
2434U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
2444U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
2454U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
2464U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
2474U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
2484U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
2494U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
2504U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
2514U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
2524U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
2534U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
2544U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
2554U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
2564U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
2574U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
2584U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
2594U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
2604U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
2614U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
2624U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
2634U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333072014-10-22
2644U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333082014-10-22
2654U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533072014-10-22
2664U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533082014-10-22
2674U4O|1|5+ 4U4O|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.633082014-10-22
2684U4O|1|1+ 4U4O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.633072014-10-22
2698CDL|1|AA+ 8CDL|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexElectron microscopy2.7233482023-09-20
2708CKU|1|AA+ 8CKU|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinElectron microscopy3.1133482023-09-20
2719F58|1|a+ 9F58|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Gcn2 dimer bound to the 60S ribosomal subunitElectron microscopy3.132922025-03-26
2725T62|1|A+ 5T62|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.133622017-02-08
2738CMJ|1|AA+ 8CMJ|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarinElectron microscopy3.7933552023-09-20
2746QTZ|1|A+ 6QTZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.533022019-06-26

Release history

Release4.244.254.26
Date2026-01-282026-02-042026-02-11

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16EM3|1|1State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.21250
26EM5|1|1State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.32438
34V7F|1|1Arx1 pre-60S particle.ELECTRON MICROSCOPY8.73394
46EM4|1|1State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.11556
56XIQ|1|1+ 6XIQ|1|4Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.23381
64V6I|1|DA+ 4V6I|1|DBLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.83511
76OIG|1|5+ 6OIG|1|8Subunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.83401
85M1J|1|14+ 5M1J|1|44Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33453
98AGW|1|f+ 8AGW|1|iYeast RQC complex in state DELECTRON MICROSCOPY2.63374
109OFV|1|f+ 9OFV|1|iConsensus reconstruction of the eukaryotic Ribosome-associated Quality Control complexELECTRON MICROSCOPY3.163374
116R87|1|1+ 6R87|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.43474
126R84|1|1+ 6R84|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.63474
135APN|1|5+ 5APN|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913270
145APO|1|5+ 5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413270
156QT0|1|A+ 6QT0|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.43320
166XIR|1|1+ 6XIR|1|4Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.23271
176WOO|1|5+ 6WOO|1|8CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.93428
188T2Z|1|A1+ 8T2Z|1|A4Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POSTELECTRON MICROSCOPY2.43319
198T3E|1|A1+ 8T3E|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IVELECTRON MICROSCOPY3.043374
208T3F|1|A1+ 8T3F|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure VELECTRON MICROSCOPY3.093374
215JUT|1|B+ 5JUT|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY43467
225JUU|1|B+ 5JUU|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY43465
235JUP|1|B+ 5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53467
245JUS|1|B+ 5JUS|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.23467
255JUO|1|B+ 5JUO|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY43467
268T3D|1|A1+ 8T3D|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIIELECTRON MICROSCOPY2.953374
278T3B|1|A1+ 8T3B|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY3.083374
288T3C|1|A1+ 8T3C|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY3.863374
298EUB|1|A1+ 8EUB|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IELECTRON MICROSCOPY2.523356
308EVQ|1|A1+ 8EVQ|1|A4Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure IELECTRON MICROSCOPY2.723356
318EWB|1|A1+ 8EWB|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIIELECTRON MICROSCOPY2.873356
328EVR|1|A1+ 8EVR|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IIELECTRON MICROSCOPY2.873356
338EVS|1|A1+ 8EVS|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure IIELECTRON MICROSCOPY2.623356
348EWC|1|A1+ 8EWC|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.453356
358EVP|1|A1+ 8EVP|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.383356
368EVT|1|A1+ 8EVT|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.23350
377N8B|1|A1+ 7N8B|1|A4Cycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.053314
387MPI|1|A1+ 7MPI|1|A4Stm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.053295
397MPJ|1|A1+ 7MPJ|1|A4Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.73295
407B7D|1|LA+ 7B7D|1|LCYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.33381
415NDV|1|1+ 5NDV|1|4Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33235
426T83|1|1b+ 6T83|1|3bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY43342
438K82|1|C1+ 8K82|1|C3Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNAELECTRON MICROSCOPY33362
446TB3|1|BQ+ 6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83381
456SNT|1|1+ 6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83342
466T4Q|1|C1+ 6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63342
476T7T|1|C1+ 6T7T|1|C3Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.13342
486T7I|1|C1+ 6T7I|1|C3Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.23342
498BJQ|1|1+ 8BJQ|1|C3Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.83459
508BIP|1|1+ 8BIP|1|C3Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complexELECTRON MICROSCOPY3.13459
517ZRS|1|5+ 7ZRS|1|3Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite mapELECTRON MICROSCOPY4.83343
529F9S|1|L1+ 9F9S|1|L2Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.93274
537ZPQ|1|5+ 7ZPQ|1|3Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)ELECTRON MICROSCOPY3.473342
547ZUW|1|5+ 7ZUW|1|3Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY4.33321
557ZUX|1|5+ 7ZUX|1|3Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.53321
565FCI|1|1+ 5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43307
574U4O|1|1+ 4U4O|1|4Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63307
585TGM|1|1+ 5TGM|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53307
595DGE|1|1+ 5DGE|1|4Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453307
605DGV|1|1+ 5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13306
615DC3|1|1+ 5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253307
625TBW|1|1+ 5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
634U4Y|1|1+ 4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
644U3M|1|1+ 4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
655LYB|1|1+ 5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253307
664V88|1|A1+ 4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33307
674U4R|1|1+ 4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83307
684U3U|1|1+ 4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93307
694U3N|1|1+ 4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
704U6F|1|1+ 4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
714U4Q|1|1+ 4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
724U4U|1|1+ 4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
734U51|1|1+ 4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
744U53|1|1+ 4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33307
754U50|1|1+ 4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
764U52|1|1+ 4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
775FCJ|1|1+ 5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13307
784U56|1|1+ 4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453307
794U55|1|1+ 4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
804U4Z|1|1+ 4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
814U4N|1|1+ 4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
825I4L|1|1+ 5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
835TGA|1|1+ 5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33307
845MEI|1|1+ 5MEI|1|4Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
855ON6|1|1+ 5ON6|1|4Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
866HHQ|1|1+ 6HHQ|1|4Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
878P9A|1|1+ 8P9A|1|480S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.93307
888P85|1|1+ 8P85|1|480S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.93292
895DAT|1|1+ 5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153307
905DGF|1|1+ 5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33307
918PNN|1|1+ 8PNN|1|480S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.93307
928P4V|1|1+ 8P4V|1|480S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.163307
936S47|1|AA+ 6S47|1|ACSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.283307
945OBM|1|1+ 5OBM|1|4Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43256
955NDW|1|1+ 5NDW|1|4Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73248
965NDG|1|1+ 5NDG|1|4Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73236
977AZY|1|E+ 7AZY|1|GContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8773319
986Q8Y|1|BQ+ 6Q8Y|1|BSCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.13319
995MC6|1|BQ+ 5MC6|1|BSCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.83323
1008UTI|1|A+ 8UTI|1|CEukaryotic 80S ribosome with Reh1 and A/P site tRNAELECTRON MICROSCOPY3.133202
1018UT0|1|A+ 8UT0|1|CEukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNAELECTRON MICROSCOPY3.223342
1027NRD|1|LA+ 7NRD|1|LCStructure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY4.363342
1038BQD|1|BQ+ 8BQD|1|BSYeast 80S ribosome in complex with Map1 (conformation 1)ELECTRON MICROSCOPY3.93457
1046TNU|1|BQ+ 6TNU|1|BSYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.13342
1057NRC|1|LA+ 7NRC|1|LCStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.93342
1068BQX|1|BQ+ 8BQX|1|BSYeast 80S ribosome in complex with Map1 (conformation 2)ELECTRON MICROSCOPY3.83459
1077ZW0|1|LA+ 7ZW0|1|LDFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.43375
1088BN3|1|1+ 8BN3|1|4Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.43301
1098AAF|1|f+ 8AAF|1|iYeast RQC complex in state GELECTRON MICROSCOPY2.53374
1108AGT|1|f+ 8AGT|1|iYeast RQC complex in state FELECTRON MICROSCOPY2.63374
1118AGZ|1|f+ 8AGZ|1|iYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.63374
1128AGX|1|f+ 8AGX|1|iYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.43374
1138AGU|1|f+ 8AGU|1|iYeast RQC complex in state EELECTRON MICROSCOPY2.73374
1148AGV|1|f+ 8AGV|1|iYeast RQC complex in state HELECTRON MICROSCOPY2.63374
1155H4P|1|1+ 5H4P|1|4Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073249
1167ZS5|1|1+ 7ZS5|1|4Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNAELECTRON MICROSCOPY3.23406
1176R86|1|1+ 6R86|1|4Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.43418
1189F58|1|a+ 9F58|1|4Gcn2 dimer bound to the 60S ribosomal subunitELECTRON MICROSCOPY3.13292
1197TOP|1|A25S+ 7TOP|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.43352
1207TOO|1|A25S+ 7TOO|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.73352
1218PFR|1|A+ 8PFR|1|LDMouse RPL39L integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.153196
1228P8U|1|A+ 8P8U|1|LDYeast 60S ribosomal subunitELECTRON MICROSCOPY2.233203
1238P8N|1|A+ 8P8N|1|LDMouse RPL39 integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.153200
1248P8M|1|A+ 8P8M|1|LDYeast 60S ribosomal subunit, RPL39 deletionELECTRON MICROSCOPY2.663193
1255T62|1|A+ 5T62|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.13362
1265T6R|1|A+ 5T6R|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.23362
1279R9O|1|C1+ 9R9O|1|C3Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 stateELECTRON MICROSCOPY2.93221
1289R9P|1|C1+ 9R9P|1|C3Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 stateELECTRON MICROSCOPY33221
1298Y0U|1|C1+ 8Y0U|1|C3dormant ribosome with STM1ELECTRON MICROSCOPY3.593379
1307RR5|1|C1+ 7RR5|1|C3Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.233379
1315GAK|1|1+ 5GAK|1|4Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883323
1326HD7|1|1+ 6HD7|1|4Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.43493
1338ZGY|1|LA+ 8ZGY|1|LC80S ribosome with P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.83342
1348ZH3|1|LA+ 8ZH3|1|LC80S ribosome with A/P-P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.73342
1358ZHB|1|LA+ 8ZHB|1|LC80S ribosome with A/A P/E tRNA and mRNA of WNVELECTRON MICROSCOPY2.63342
1368ZHC|1|LA+ 8ZHC|1|LCpre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNVELECTRON MICROSCOPY2.33342
1378ZGR|1|LA+ 8ZGR|1|LC80S ribosome with A/A tRNA and mRNA of WNVELECTRON MICROSCOPY2.73342
1383J78|1|2S+ 3J78|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.33460
1393J77|1|2S+ 3J77|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.23445
1408K2D|1|C1+ 8K2D|1|C3Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5AELECTRON MICROSCOPY3.23345
1418T2X|1|A1+ 8T2X|1|A4Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PREELECTRON MICROSCOPY2.463374
1428T2Y|1|A1+ 8T2Y|1|A4Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PREELECTRON MICROSCOPY2.23317
1438T30|1|A1+ 8T30|1|A4Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotatedELECTRON MICROSCOPY2.883317
1448T3A|1|A1+ 8T3A|1|A4Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2ELECTRON MICROSCOPY2.863372
1458CGN|1|AA+ 8CGN|1|CCNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.283355
1468CIV|1|AA+ 8CIV|1|CCTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.473355
1478CEH|1|AA+ 8CEH|1|CCTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.053355
1488CDR|1|AA+ 8CDR|1|CCTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.043355
1498CG8|1|AA+ 8CG8|1|CCTranslocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.573355
1508CMJ|1|AA+ 8CMJ|1|CCTranslocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarinELECTRON MICROSCOPY3.793355
1518Z71|1|A+ 8Z71|1|CState 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decodingELECTRON MICROSCOPY3.63345
1528Z70|1|A+ 8Z70|1|CState 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decodingELECTRON MICROSCOPY3.23345
1538YLR|1|A+ 8YLR|1|CState 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocationELECTRON MICROSCOPY3.93350
1546GQV|1|1+ 6GQV|1|4Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY43381
1556GQ1|1|1+ 6GQ1|1|4Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.43381
1566GQB|1|1+ 6GQB|1|4Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.93381
1578YLD|1|A+ 8YLD|1|CState 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocationELECTRON MICROSCOPY3.93351
1587OSM|1|25S+ 7OSM|1|58SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33320
1597OSA|1|25S+ 7OSA|1|58SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION33338
1608CKU|1|AA+ 8CKU|1|CCTranslocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarinELECTRON MICROSCOPY3.113348
1618CF5|1|AA+ 8CF5|1|CCTranslocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.713348
1628CCS|1|AA+ 8CCS|1|CC80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.973348
1638CDL|1|AA+ 8CDL|1|CC80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complexELECTRON MICROSCOPY2.723348
1649F9S|1|M1+ 9F9S|1|M2Yeast SDD1 Disome with Mbf1ELECTRON MICROSCOPY2.93348
1658XU8|1|A+ 8XU8|1|CState 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferationELECTRON MICROSCOPY3.43347
1666Z6K|1|C1+ 6Z6K|1|C3Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.43284
1676Z6J|1|C1+ 6Z6J|1|C3Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.43284
1683J6X|1|2S+ 3J6X|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.13466
1693J6Y|1|2S+ 3J6Y|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.13466
1705NDW|1|5+ 5NDW|1|8Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73238
1715NDG|1|5+ 5NDG|1|8Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73284
1726I7O|1|YQ+ 6I7O|1|YSThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.33284
1736SV4|1|YQ+ 6SV4|1|YSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
1746SV4|1|ZQ+ 6SV4|1|ZSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
1756SV4|1|BQ+ 6SV4|1|BSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
1766I7O|1|BQ+ 6I7O|1|BSThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.33284
1776T83|1|Aa+ 6T83|1|CaStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY43284
1788P4V|1|AR+ 8P4V|1|AT80S yeast ribosome in complex with HaterumaimideQX-RAY DIFFRACTION3.163305
1798PNN|1|AR+ 8PNN|1|AT80S yeast ribosome in complex with BromolissoclimideX-RAY DIFFRACTION2.93294
1806HHQ|1|AR+ 6HHQ|1|ATCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13305
1818P85|1|AR+ 8P85|1|AT80S yeast ribosome in complex with FluorolissoclimideX-RAY DIFFRACTION2.93305
1828P9A|1|AR+ 8P9A|1|AT80S yeast ribosome in complex with MethyllissoclimideX-RAY DIFFRACTION2.93288
1835MEI|1|AR+ 5MEI|1|ATCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
1845ON6|1|AR+ 5ON6|1|ATCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
1855TBW|1|AR+ 5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
1865DGE|1|5+ 5DGE|1|8Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453308
1875DGV|1|5+ 5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13307
1885TGM|1|5+ 5TGM|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53308
1895TGA|1|5+ 5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33308
1904U6F|1|5+ 4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
1914U52|1|5+ 4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
1924U50|1|5+ 4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
1934U53|1|5+ 4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33308
1944U51|1|5+ 4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
1954U4U|1|5+ 4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
1964U4Q|1|5+ 4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
1974U3M|1|5+ 4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
1984U55|1|5+ 4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
1994U4Z|1|5+ 4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
2004U4N|1|5+ 4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
2015I4L|1|5+ 5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
2025LYB|1|5+ 5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253308
2034V88|1|A5+ 4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33308
2044V8T|1|5+ 4V8T|1|8Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.13308
2054U4R|1|5+ 4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83308
2064U3U|1|5+ 4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93308
2074U3N|1|5+ 4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
2084U4Y|1|5+ 4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
2094U56|1|5+ 4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453308
2105FCI|1|5+ 5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43308
2115FCJ|1|5+ 5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13308
2124U4O|1|5+ 4U4O|1|8Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63308
2135DC3|1|5+ 5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253327
2145DAT|1|5+ 5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153327
2155DGF|1|5+ 5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33327
2165OBM|1|5+ 5OBM|1|8Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43292
2175NDV|1|5+ 5NDV|1|8Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33245
2184V8Y|1|B5+ 4V8Y|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.33305
2194V8Z|1|B5+ 4V8Z|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.63305
2206RI5|1|A+ 6RI5|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.33303
2216QTZ|1|A+ 6QTZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.53302
2226N8O|1|A+ 6N8O|1|CCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53359
2234V7R|1|B1+ 4V7R|1|B3Yeast 80S ribosome.X-RAY DIFFRACTION43364
2244V7R|1|D1+ 4V7R|1|D3Yeast 80S ribosome.X-RAY DIFFRACTION43364
2256RZZ|1|A+ 6RZZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.23302
2266QIK|1|A+ 6QIK|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.13302
2276S05|1|A+ 6S05|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.93302
2286N8L|1|1+ 6N8L|1|3Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.63358
2296N8N|1|A+ 6N8N|1|CCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.83361
2306N8M|1|A+ 6N8M|1|CCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53361
2318HFR|1|1e+ 8HFR|1|3nNPC-trapped pre-60S particleELECTRON MICROSCOPY2.643430
2326N8K|1|1+ 6N8K|1|3Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.63358
2337Z34|1|1+ 7Z34|1|3Structure of pre-60S particle bound to DRG1(AFG2)ELECTRON MICROSCOPY3.83504
2347OF1|1|1+ 7OF1|1|2Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.12945
2356N8J|1|1+ 6N8J|1|3Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53205
2366YLY|1|1+ 6YLY|1|3pre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.82834
2376YLG|1|1+ 6YLG|1|2Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY33193
2386YLH|1|1+ 6YLH|1|2Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.13193
2395JCS|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.53394
2407U0H|1|1+ 7U0H|1|2State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall modelELECTRON MICROSCOPY2.762880
2416YLX|1|1+ 6YLX|1|2pre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.92692
2427UOO|1|1+ 7UOO|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.343149
2437UQZ|1|1+ 7UQZ|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.443144
2447V08|1|1+ 7V08|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.363144
2457UQB|1|1+ 7UQB|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.433149
2467UG6|1|1+ 7UG6|1|2Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922ELECTRON MICROSCOPY2.93216
2477OHQ|1|1+ 7OHQ|1|2Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.13211
2487OH3|1|1+ 7OH3|1|2Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.43168
2496FT6|1|1+ 6FT6|1|2Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.93220
2503JCT|1|1+ 3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083216
2516M62|1|1+ 6M62|1|2Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.23130
2527BTB|1|1+ 7BTB|1|2Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.223216
2537OHT|1|1Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population AELECTRON MICROSCOPY4.71485
2547BT6|1|1+ 7BT6|1|2Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.123120
2557OHP|1|1+ 7OHP|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AELECTRON MICROSCOPY3.91716
2567OHU|1|1+ 7OHU|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population BELECTRON MICROSCOPY3.71840
2577OHY|1|1+ 7OHY|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population BELECTRON MICROSCOPY3.91837
2588V87|1|1+ 8V87|1|260S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)ELECTRON MICROSCOPY2.662644
2597R7A|1|1+ 7R7A|1|2State E1 nucleolar 60S ribosome biogenesis intermediate - Composite modelELECTRON MICROSCOPY3.042729
2607NAC|1|1+ 7NAC|1|2State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite modelELECTRON MICROSCOPY3.042819
2617OHV|1|1+ 7OHV|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CELECTRON MICROSCOPY3.92296
2627OHR|1|1+ 7OHR|1|2Nog1-TAP associated immature ribosomal particle population E from S. cerevisiaeELECTRON MICROSCOPY4.722531
2636ELZ|1|1+ 6ELZ|1|2State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32615
2646EM1|1|1+ 6EM1|1|2State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.61943
2657OHS|1|1+ 7OHS|1|2Nog1-TAP associated immature ribosomal particle population F from S. cerevisiaeELECTRON MICROSCOPY4.381844
2667OHW|1|1+ 7OHW|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.51788
2677OHX|1|1+ 7OHX|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.31709
2685Z3G|1|A+ 5Z3G|1|BCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.651657
2698V83|1|1+ 8V83|1|260S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)ELECTRON MICROSCOPY2.532165
2708V84|1|1+ 8V84|1|260S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)ELECTRON MICROSCOPY2.72120
2716CB1|1|1+ 6CB1|1|2Yeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.61528
2726C0F|1|1+ 6C0F|1|2Yeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.71515
2739QJC|1|1Yeast pre-60S Domain II intermediateELECTRON MICROSCOPY3.2509
2748E5T|1|1+ 8E5T|1|2Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediateELECTRON MICROSCOPY4881

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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