Equivalence class NR_all_90630.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6JDV|1|B+ 6JDV|1|C+ 6JDV|1|D (rep) | non-target DNA strand, sgRNA, target DNA strand | synthetic construct | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state | X-ray diffraction | 3.1 | 189 | 2019-11-06 | |||
| 2 | 6JE4|1|F+ 6JE4|1|G+ 6JE4|1|H | non-target DNA strand, sgRNA, target DNA strand | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 185 | 2019-11-06 | |||
| 3 | 6KC8|1|B+ 6KC8|1|C+ 6KC8|1|P+ 6KC8|1|D | DNA (5'-D(*AP*TP*AP*TP*GP*AP*TP*TP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*AP*AP*TP*CP*AP*TP*AP*TP*GP*TP*A)-3'), DNA (5'-D(P*AP*AP*GP*TP*TP*AP*AP*AP*TP*AP*GP*CP*AP*GP*AP*GP*TP*GP*AP*CP*C)-3'), sgRNA | synthetic construct | Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state | X-ray diffraction | 2.9 | 176 | 2019-11-06 | |||
| 4 | 6JE4|1|L+ 6JE4|1|M+ 6JE4|1|N | non-target DNA strand, sgRNA, target DNA strand | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 186 | 2019-11-06 | |||
| 5 | 6JE4|1|P+ 6JE4|1|Q+ 6JE4|1|R | non-target DNA strand, sgRNA, target DNA strand | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 183 | 2019-11-06 | |||
| 6 | 6JE3|1|B+ 6JE3|1|C+ 6JE3|1|D | non-target DNA strand, sgRNA, target DNA strand | synthetic construct | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang | X-ray diffraction | 2.93 | 165 | 2019-11-06 | |||
| 7 | 6JE4|1|B+ 6JE4|1|C+ 6JE4|1|D | non-target DNA strand, sgRNA, target DNA strand | synthetic construct | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 182 | 2019-11-06 | |||
| 8 | 6JFU|1|B+ 6JFU|1|C+ 6JFU|1|D | non-target strand, sgRNA, target-strand DNA | synthetic construct | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) | X-ray diffraction | 3.2 | 151 | 2019-11-06 | |||
| 9 | 6KC7|1|B+ 6KC7|1|C+ 6KC7|1|D | DNA (5'-D(*AP*TP*AP*TP*GP*AP*TP*TP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*AP*AP*TP*CP*AP*TP*AP*TP*GP*TP*AP*AP*AP*GP*TP*T)-3'), sgRNA | synthetic construct | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state | X-ray diffraction | 3.3 | 141 | 2019-11-06 | |||
| 10 | 6JE9|1|B | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.46 | 115 | 2019-11-06 | |||
| 11 | 6JE9|1|D | sgRNA | synthetic construct | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.46 | 113 | 2019-11-06 | |||
| 12 | 6JDQ|1|B | sgRNA | synthetic construct | Crystal structure of Nme1Cas9 in complex with sgRNA | X-ray diffraction | 2.95 | 117 | 2019-11-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6JE4|1|F+ 6JE4|1|G+ 6JE4|1|H | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 185 | |
| 2 | 6JE4|1|L+ 6JE4|1|M+ 6JE4|1|N | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 186 | |
| 3 | 6JE4|1|B+ 6JE4|1|C+ 6JE4|1|D | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 182 | |
| 4 | 6JE4|1|P+ 6JE4|1|Q+ 6JE4|1|R | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 183 | |
| 5 | 6JE9|1|B | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.46 | 115 | |
| 6 | 6JE9|1|D | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.46 | 113 | |
| 7 | 6JDQ|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA | X-RAY DIFFRACTION | 2.95 | 117 | |
| 8 | 6KC7|1|B+ 6KC7|1|C+ 6KC7|1|D | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state | X-RAY DIFFRACTION | 3.3 | 141 | |
| 9 | 6KC8|1|B+ 6KC8|1|C+ 6KC8|1|P+ 6KC8|1|D | Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state | X-RAY DIFFRACTION | 2.9 | 176 | |
| 10 | 6JDV|1|B+ 6JDV|1|C+ 6JDV|1|D | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state | X-RAY DIFFRACTION | 3.1 | 189 | |
| 11 | 6JE3|1|B+ 6JE3|1|C+ 6JE3|1|D | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang | X-RAY DIFFRACTION | 2.93 | 165 | |
| 12 | 6JFU|1|B+ 6JFU|1|C+ 6JFU|1|D | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) | X-RAY DIFFRACTION | 3.2 | 151 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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