NR_all_90633.28

Members (49)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	9QEH\|1\|A (rep)	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus USA300	Bacteria	RF02541	Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin	Electron microscopy	2.08	2616	2025-06-04
2	9QEG\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus USA300	Bacteria	RF02541	Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin	Electron microscopy	2.21	2586	2025-06-04
3	9GHG\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)	Electron microscopy	2.22	2848	2025-03-26
4	9T4R\|1\|a	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 70S initiation complex with a natural mRNA	Electron microscopy	2.3	2912	2026-02-25
5	7ASM\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 50S after 30 minutes incubation at 37C	Electron microscopy	2.48	2834	2021-11-17
6	9GHH\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)	Electron microscopy	2.7	2848	2025-03-26
7	6WQN\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid	Electron microscopy	2.9	2687	2020-06-03
8	7TTW\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance	Electron microscopy	2.9	2690	2022-07-06
9	6WRU\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid	Electron microscopy	3.1	2665	2020-06-03
10	6S0Z\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.	Electron microscopy	2.3	2905	2019-08-21
11	6WQQ\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid	Electron microscopy	3.1	2698	2020-06-03
12	7ASP\|1\|Y	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 70S after 50 minutes incubation at 37C	Electron microscopy	2.86	2723	2021-11-17
13	6WRS\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid	Electron microscopy	3.2	2698	2020-06-03
14	6DDG\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6	Electron microscopy	3.1	2646	2019-03-20
15	7NHM\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	70S ribosome from Staphylococcus aureus	Electron microscopy	3.1	2824	2021-05-05
16	4WF9\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin	X-ray diffraction	3.43	2712	2015-10-21
17	5NGM\|1\|AA	Large subunit ribosomal RNA	23S Ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	2.9S structure of the 70S ribosome composing the S. aureus 100S complex	Electron microscopy	2.9	2905	2017-10-04
18	5HL7\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin	X-ray diffraction	3.55	2705	2016-12-21
19	6DDD\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5	Electron microscopy	3.1	2646	2019-03-20
20	7NHL\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus	Electron microscopy	3.1	2914	2021-05-05
21	7ASO\|1\|Y	Large subunit ribosomal RNA	23S	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 70S after 30 minutes incubation at 37C	Electron microscopy	3.11	2720	2021-11-17
22	4WFA\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid	X-ray diffraction	3.39	2711	2015-10-21
23	5T7V\|1\|B	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)	Electron microscopy	3.6	2768	2017-05-31
24	4WFB\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205	X-ray diffraction	3.43	2707	2015-10-21
25	5HKV\|1\|X	Large subunit ribosomal RNA	23s ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin	X-ray diffraction	3.66	2695	2017-05-03
26	4WCE\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus	X-ray diffraction	3.53	2708	2015-10-21
27	7TTU\|1\|1	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)	Electron microscopy	3	2684	2022-07-06
28	6S0X\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.	Electron microscopy	2.42	2905	2019-08-21
29	5NRG\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02	X-ray diffraction	3.44	2710	2017-08-09
30	6SJ6\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus	Electron microscopy	3.23	2585	2020-04-08
31	5ND8\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Hibernating ribosome from Staphylococcus aureus (Unrotated state)	Electron microscopy	3.7	2912	2017-06-28
32	5TCU\|1\|B	Large subunit ribosomal RNA	23S RRNA	Staphylococcus aureus	Bacteria	RF02541	Methicillin sensitive Staphylococcus aureus 70S ribosome	Electron microscopy	3.9	2755	2017-05-24
33	5ND9\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Hibernating ribosome from Staphylococcus aureus (Rotated state)	Electron microscopy	3.7	2914	2017-06-28
34	6S12\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).	Electron microscopy	3.2	2905	2019-08-21
35	7ASN\|1\|A	Large subunit ribosomal RNA	23S	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus 50S after 30 minutes incubation a 37C	Electron microscopy	2.73	2742	2021-11-17
36	5LI0\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	70S ribosome from Staphylococcus aureus	Electron microscopy	3.8	2914	2016-12-28
37	6FXC\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	Electron microscopy	6.76	2905	2018-03-21
38	6FXC\|1\|AA	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	Electron microscopy	6.76	2905	2018-03-21
39	7P48\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	Staphylococcus aureus ribosome in complex with Sal(B)	Electron microscopy	2.9	2661	2022-02-02
40	6S13\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).	Electron microscopy	3.58	2905	2019-08-21
41	8P2G\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state	Electron microscopy	2.02	2844	2024-05-01
42	8P2F\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	Electron microscopy	2.44	2844	2024-05-01
43	8P2H\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state	Electron microscopy	2.49	2844	2024-05-01
44	8Y38\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.	Electron microscopy	2.58	2885	2024-07-24
45	8Y37\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.	Electron microscopy	2.53	2884	2024-07-24
46	6HMA\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit	Electron microscopy	2.65	2834	2018-11-14
47	8Y36\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.	Electron microscopy	2.65	2885	2024-07-24
48	6YEF\|1\|A	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus subsp. aureus NCTC 8325	Bacteria	RF02541	70S initiation complex with assigned rRNA modifications from Staphylococcus aureus	Electron microscopy	3.2	2881	2021-01-27
49	8Y39\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.	Electron microscopy	3.6	2885	2024-07-24

Release history

Release	4.28
Date	2026-02-25

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7ASP\|1\|Y	Staphylococcus aureus 70S after 50 minutes incubation at 37C	ELECTRON MICROSCOPY	2.86	2723
2	7ASO\|1\|Y	Staphylococcus aureus 70S after 30 minutes incubation at 37C	ELECTRON MICROSCOPY	3.11	2720
3	6HMA\|1\|A	Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit	ELECTRON MICROSCOPY	2.65	2834
4	7ASM\|1\|A	Staphylococcus aureus 50S after 30 minutes incubation at 37C	ELECTRON MICROSCOPY	2.48	2834
5	6FXC\|1\|BA	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	ELECTRON MICROSCOPY	6.76	2905
6	6FXC\|1\|AA	The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus	ELECTRON MICROSCOPY	6.76	2905
7	5NGM\|1\|AA	2.9S structure of the 70S ribosome composing the S. aureus 100S complex	ELECTRON MICROSCOPY	2.9	2905
8	9QEG\|1\|A	Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin	ELECTRON MICROSCOPY	2.21	2586
9	9QEH\|1\|A	Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin	ELECTRON MICROSCOPY	2.08	2616
10	9T4R\|1\|a	Staphylococcus aureus 70S initiation complex with a natural mRNA	ELECTRON MICROSCOPY	2.3	2912
11	9GHH\|1\|A	Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)	ELECTRON MICROSCOPY	2.7	2848
12	9GHG\|1\|A	Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)	ELECTRON MICROSCOPY	2.22	2848
13	8P2F\|1\|A	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state	ELECTRON MICROSCOPY	2.44	2844
14	8P2G\|1\|A	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state	ELECTRON MICROSCOPY	2.02	2844
15	8P2H\|1\|A	Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state	ELECTRON MICROSCOPY	2.49	2844
16	7NHM\|1\|A	70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.1	2824
17	7NHL\|1\|A	VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.1	2914
18	5NRG\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02	X-RAY DIFFRACTION	3.44	2710
19	5HKV\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin	X-RAY DIFFRACTION	3.66	2695
20	5HL7\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin	X-RAY DIFFRACTION	3.55	2705
21	4WCE\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus	X-RAY DIFFRACTION	3.53	2708
22	4WFA\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid	X-RAY DIFFRACTION	3.39	2711
23	4WF9\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin	X-RAY DIFFRACTION	3.43	2712
24	4WFB\|1\|X	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205	X-RAY DIFFRACTION	3.43	2707
25	6DDG\|1\|1	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6	ELECTRON MICROSCOPY	3.1	2646
26	6DDD\|1\|1	Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5	ELECTRON MICROSCOPY	3.1	2646
27	5LI0\|1\|A	70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.8	2914
28	5ND8\|1\|A	Hibernating ribosome from Staphylococcus aureus (Unrotated state)	ELECTRON MICROSCOPY	3.7	2912
29	5ND9\|1\|A	Hibernating ribosome from Staphylococcus aureus (Rotated state)	ELECTRON MICROSCOPY	3.7	2914
30	5TCU\|1\|B	Methicillin sensitive Staphylococcus aureus 70S ribosome	ELECTRON MICROSCOPY	3.9	2755
31	5T7V\|1\|B	Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)	ELECTRON MICROSCOPY	3.6	2768
32	6WRU\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid	ELECTRON MICROSCOPY	3.1	2665
33	6WQQ\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid	ELECTRON MICROSCOPY	3.1	2698
34	6WRS\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid	ELECTRON MICROSCOPY	3.2	2698
35	7TTW\|1\|1	50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance	ELECTRON MICROSCOPY	2.9	2690
36	7TTU\|1\|1	50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)	ELECTRON MICROSCOPY	3	2684
37	6WQN\|1\|1	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid	ELECTRON MICROSCOPY	2.9	2687
38	6YEF\|1\|A	70S initiation complex with assigned rRNA modifications from Staphylococcus aureus	ELECTRON MICROSCOPY	3.2	2881
39	7P48\|1\|A	Staphylococcus aureus ribosome in complex with Sal(B)	ELECTRON MICROSCOPY	2.9	2661
40	8Y38\|1\|A	Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.	ELECTRON MICROSCOPY	2.58	2885
41	8Y39\|1\|A	cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.	ELECTRON MICROSCOPY	3.6	2885
42	8Y37\|1\|A	Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.	ELECTRON MICROSCOPY	2.53	2884
43	8Y36\|1\|A	cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.	ELECTRON MICROSCOPY	2.65	2885
44	6S0Z\|1\|A	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.	ELECTRON MICROSCOPY	2.3	2905
45	6S0X\|1\|A	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.	ELECTRON MICROSCOPY	2.42	2905
46	6S12\|1\|A	Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).	ELECTRON MICROSCOPY	3.2	2905
47	6S13\|1\|A	Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).	ELECTRON MICROSCOPY	3.58	2905
48	6SJ6\|1\|A	Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus	ELECTRON MICROSCOPY	3.23	2585
49	7ASN\|1\|A	Staphylococcus aureus 50S after 30 minutes incubation a 37C	ELECTRON MICROSCOPY	2.73	2742

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_90633.28 Current

Release history

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