#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19QEH|1|A (rep)Large subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus USA300BacteriaRF02541Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycinElectron microscopy2.0826162025-06-04
29QEG|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureus subsp. aureus USA300BacteriaRF02541Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycinElectron microscopy2.2125862025-06-04
39GHG|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)Electron microscopy2.2228482025-03-26
49T4R|1|aLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 70S initiation complex with a natural mRNAElectron microscopy2.329122026-02-25
57ASM|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 50S after 30 minutes incubation at 37CElectron microscopy2.4828342021-11-17
69GHH|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)Electron microscopy2.728482025-03-26
76WQN|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolidElectron microscopy2.926872020-06-03
87TTW|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF0254150S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistanceElectron microscopy2.926902022-07-06
96WRU|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolidElectron microscopy3.126652020-06-03
106S0Z|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.329052019-08-21
116WQQ|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolidElectron microscopy3.126982020-06-03
129I88|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelinElectron microscopy2.9828062026-04-15
139I89|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelinElectron microscopy3.0128082026-04-15
147ASP|1|YLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.8627232021-11-17
156WRS|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolidElectron microscopy3.226982020-06-03
166DDG|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6Electron microscopy3.126462019-03-20
177NHM|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0254170S ribosome from Staphylococcus aureusElectron microscopy3.128242021-05-05
184WF9|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.4327122015-10-21
195NGM|1|AALarge subunit ribosomal RNA23S Ribosomal RNAStaphylococcus aureusBacteriaRF025412.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.929052017-10-04
205HL7|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-ray diffraction3.5527052016-12-21
216DDD|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5Electron microscopy3.126462019-03-20
227NHL|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.129142021-05-05
237ASO|1|YLarge subunit ribosomal RNA23SStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.1127202021-11-17
244WFA|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.3927112015-10-21
255T7V|1|BLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.627682017-05-31
264WFB|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.4327072015-10-21
275HKV|1|XLarge subunit ribosomal RNA23s ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-ray diffraction3.6626952017-05-03
284WCE|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureusX-ray diffraction3.5327082015-10-21
297TTU|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF0254150S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)Electron microscopy326842022-07-06
306S0X|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.4229052019-08-21
315NRG|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.4427102017-08-09
326SJ6|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureusElectron microscopy3.2325852020-04-08
335ND8|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.729122017-06-28
345TCU|1|BLarge subunit ribosomal RNA23S RRNAStaphylococcus aureusBacteriaRF02541Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.927552017-05-24
355ND9|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.729142017-06-28
366S12|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).Electron microscopy3.229052019-08-21
377ASN|1|ALarge subunit ribosomal RNA23SStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 50S after 30 minutes incubation a 37CElectron microscopy2.7327422021-11-17
385LI0|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF0254170S ribosome from Staphylococcus aureusElectron microscopy3.829142016-12-28
396FXC|1|BALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.7629052018-03-21
406FXC|1|AALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.7629052018-03-21
417P48|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus ribosome in complex with Sal(B)Electron microscopy2.926612022-02-02
426S13|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.5829052019-08-21
438P2G|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateElectron microscopy2.0228442024-05-01
448P2F|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateElectron microscopy2.4428442024-05-01
458P2H|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateElectron microscopy2.4928442024-05-01
468Y38|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.Electron microscopy2.5828852024-07-24
478Y37|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.Electron microscopy2.5328842024-07-24
486HMA|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitElectron microscopy2.6528342018-11-14
498Y36|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.Electron microscopy2.6528852024-07-24
506YEF|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0254170S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.228812021-01-27
518Y39|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.Electron microscopy3.628852024-07-24

Release history

Release4.35
Date2026-04-15

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This classParent classesRelease idIntersectionAdded to this classOnly in parent

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17ASP|1|YStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.862723
27ASO|1|YStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.112720
36HMA|1|AImproved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitELECTRON MICROSCOPY2.652834
47ASM|1|AStaphylococcus aureus 50S after 30 minutes incubation at 37CELECTRON MICROSCOPY2.482834
55NGM|1|AA2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92905
66FXC|1|AAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
76FXC|1|BAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
85TCU|1|BMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92755
95T7V|1|BMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62768
106WQN|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolidELECTRON MICROSCOPY2.92687
117TTW|1|150S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistanceELECTRON MICROSCOPY2.92690
127TTU|1|150S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)ELECTRON MICROSCOPY32684
136WRS|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolidELECTRON MICROSCOPY3.22698
146WQQ|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolidELECTRON MICROSCOPY3.12698
156WRU|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolidELECTRON MICROSCOPY3.12665
166YEF|1|A70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.22881
177P48|1|AStaphylococcus aureus ribosome in complex with Sal(B)ELECTRON MICROSCOPY2.92661
185ND8|1|AHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72912
195ND9|1|AHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72914
205LI0|1|A70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82914
216DDD|1|1Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5ELECTRON MICROSCOPY3.12646
226DDG|1|1Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6ELECTRON MICROSCOPY3.12646
234WFB|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.432707
244WF9|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.432712
254WFA|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.392711
265HL7|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.552705
274WCE|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.532708
285HKV|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.662695
295NRG|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.442710
307NHL|1|AVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.12914
317NHM|1|A70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.12824
329I88|1|AStructure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelinELECTRON MICROSCOPY2.982806
339I89|1|AStructure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelinELECTRON MICROSCOPY3.012808
349GHH|1|AStaphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)ELECTRON MICROSCOPY2.72848
359GHG|1|AStaphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)ELECTRON MICROSCOPY2.222848
368P2F|1|AStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational stateELECTRON MICROSCOPY2.442844
378P2H|1|AStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.492844
388P2G|1|AStaphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric stateELECTRON MICROSCOPY2.022844
399T4R|1|aStaphylococcus aureus 70S initiation complex with a natural mRNAELECTRON MICROSCOPY2.32912
409QEH|1|ACryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycinELECTRON MICROSCOPY2.082616
419QEG|1|ACryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycinELECTRON MICROSCOPY2.212586
428Y39|1|Acryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.ELECTRON MICROSCOPY3.62885
438Y38|1|ACryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.ELECTRON MICROSCOPY2.582885
448Y37|1|ACryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.ELECTRON MICROSCOPY2.532884
458Y36|1|Acryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.ELECTRON MICROSCOPY2.652885
466S0Z|1|AErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.32905
476S0X|1|AErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.422905
486S12|1|AErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.22905
496S13|1|AErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.582905
506SJ6|1|ACryo-EM structure of 50S-RsfS complex from Staphylococcus aureusELECTRON MICROSCOPY3.232585
517ASN|1|AStaphylococcus aureus 50S after 30 minutes incubation a 37CELECTRON MICROSCOPY2.732742

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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