NR_all_93855.15

Members (41)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7QI4\|1\|AA (rep)	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome at 2.2 A resolution	Electron microscopy	2.21	2022-07-13
2	7P2E\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	Electron microscopy	2.4	2022-07-27
3	6ZM6\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	2021-01-13
4	7QI5\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution	Electron microscopy	2.63	2023-07-05
5	7PNX\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a	Electron microscopy	2.76	2022-06-15
6	8CSS\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State D)	Electron microscopy	2.36	2022-12-14
7	6ZM5\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	2021-01-13
8	7QI6\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	Electron microscopy	2.98	2023-05-17
9	6VMI\|1\|AA	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	2020-08-05
10	7PO3\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome small subunit	Electron microscopy	2.92	2022-06-15
11	7PO1\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Initiation complex of human mitochondrial ribosome small subunit with IF3	Electron microscopy	2.92	2022-06-15
12	7PO0\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3	Electron microscopy	2.9	2022-06-15
13	6VLZ\|1\|AA	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	2020-08-05
14	6RW4\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	Electron microscopy	2.97	2020-06-03
15	8OIS\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA	Electron microscopy	3	2023-06-14
16	8CSR\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State C)	Electron microscopy	2.54	2022-12-14
17	8OIR\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	55S human mitochondrial ribosome with mtRF1 and P-site tRNA	Electron microscopy	3.1	2023-06-14
18	7PO2\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	Electron microscopy	3.09	2022-06-15
19	7PNY\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b	Electron microscopy	3.06	2022-06-15
20	7PNZ\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c	Electron microscopy	3.09	2022-06-15
21	6RW5\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	Electron microscopy	3.14	2020-06-03
22	8CST\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State E)	Electron microscopy	2.85	2022-12-14
23	8CSQ\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State B)	Electron microscopy	2.54	2022-12-14
24	8CSU\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State C*)	Electron microscopy	3.03	2022-12-14
25	7L08\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	2021-05-12
26	8CSP\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State A)	Electron microscopy	2.66	2022-12-14
27	7A5I\|1\|A6	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	Electron microscopy	3.7	2020-12-23
28	7A5K\|1\|A6	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	Electron microscopy	3.7	2020-12-23
29	6ZSC\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	2020-09-16
30	6ZSD\|1\|AA	Small subunit ribosomal RNA	12SrRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	Electron microscopy	3.7	2020-09-16
31	3J9M\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	2015-04-15
32	7OG4\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with P/E-tRNA	Electron microscopy	3.8	2021-06-23
33	6ZSA\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	Electron microscopy	4	2020-10-21
34	6ZSG\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	Electron microscopy	4	2020-10-14
35	6ZS9\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with ribosome recycling factor	Electron microscopy	4	2020-10-14
36	7A5G\|1\|A6	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	Electron microscopy	4.33	2020-12-23
37	6NU2\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	3.9	2019-04-17
38	7A5F\|1\|A6	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	Electron microscopy	4.4	2020-12-23
39	6ZSB\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	Electron microscopy	4.5	2020-09-16
40	6NU3\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	4.4	2019-04-17
41	6ZSE\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	Electron microscopy	5	2020-09-16

Release history

Release	3.290	3.291	3.292	3.293	3.294	3.295
Date	2023-07-05	2023-07-12	2023-07-19	2023-07-26	2023-08-02	2023-08-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_93855.15	NR_all_93855.14	3.290	(40) 3J9M\|1\|AA, 6NU2\|1\|AA, 6NU3\|1\|AA, 6RW4\|1\|A, 6RW5\|1\|A, 6VLZ\|1\|AA, 6VMI\|1\|AA, 6ZM5\|1\|AA, 6ZM6\|1\|AA, 6ZS9\|1\|AA, 6ZSA\|1\|AA, 6ZSB\|1\|AA, 6ZSC\|1\|AA, 6ZSD\|1\|AA, 6ZSE\|1\|AA, 6ZSG\|1\|AA, 7A5F\|1\|A6, 7A5G\|1\|A6, 7A5I\|1\|A6, 7A5K\|1\|A6, 7L08\|1\|AA, 7OG4\|1\|AA, 7P2E\|1\|A, 7PNX\|1\|A, 7PNY\|1\|A, 7PNZ\|1\|A, 7PO0\|1\|A, 7PO1\|1\|A, 7PO2\|1\|A, 7PO3\|1\|A, 7QI4\|1\|AA, 7QI6\|1\|AA, 8CSP\|1\|A, 8CSQ\|1\|A, 8CSR\|1\|A, 8CSS\|1\|A, 8CST\|1\|A, 8CSU\|1\|A, 8OIR\|1\|AA, 8OIS\|1\|AA	(1) 7QI5\|1\|AA	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_93855.15	NR_all_93855.16	3.296	(41) 3J9M\|1\|AA, 6NU2\|1\|AA, 6NU3\|1\|AA, 6RW4\|1\|A, 6RW5\|1\|A, 6VLZ\|1\|AA, 6VMI\|1\|AA, 6ZM5\|1\|AA, 6ZM6\|1\|AA, 6ZS9\|1\|AA, 6ZSA\|1\|AA, 6ZSB\|1\|AA, 6ZSC\|1\|AA, 6ZSD\|1\|AA, 6ZSE\|1\|AA, 6ZSG\|1\|AA, 7A5F\|1\|A6, 7A5G\|1\|A6, 7A5I\|1\|A6, 7A5K\|1\|A6, 7L08\|1\|AA, 7OG4\|1\|AA, 7P2E\|1\|A, 7PNX\|1\|A, 7PNY\|1\|A, 7PNZ\|1\|A, 7PO0\|1\|A, 7PO1\|1\|A, 7PO2\|1\|A, 7PO3\|1\|A, 7QI4\|1\|AA, 7QI5\|1\|AA, 7QI6\|1\|AA, 8CSP\|1\|A, 8CSQ\|1\|A, 8CSR\|1\|A, 8CSS\|1\|A, 8CST\|1\|A, 8CSU\|1\|A, 8OIR\|1\|AA, 8OIS\|1\|AA	(0)	(1) 8ANY\|1\|AA

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	7PNY\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b	ELECTRON MICROSCOPY	3.06	946
2	6NU3\|1\|AA	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	4.4	923
3	6NU2\|1\|AA	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	3.9	923
4	6VLZ\|1\|AA	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	944
5	6VMI\|1\|AA	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	944
6	7L08\|1\|AA	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	944
7	6ZSE\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	5	927
8	6ZS9\|1\|AA	Human mitochondrial ribosome in complex with ribosome recycling factor	ELECTRON MICROSCOPY	4	927
9	7OG4\|1\|AA	Human mitochondrial ribosome in complex with P/E-tRNA	ELECTRON MICROSCOPY	3.8	924
10	6ZSC\|1\|AA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	927
11	6ZSB\|1\|AA	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	ELECTRON MICROSCOPY	4.5	927
12	6ZSD\|1\|AA	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	3.7	927
13	6ZSA\|1\|AA	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	ELECTRON MICROSCOPY	4	927
14	6ZSG\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	4	927
15	6ZM5\|1\|AA	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	954
16	6ZM6\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	954
17	7QI5\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution	ELECTRON MICROSCOPY	2.63	949
18	7QI4\|1\|AA	Human mitochondrial ribosome at 2.2 A resolution	ELECTRON MICROSCOPY	2.21	949
19	7QI6\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	ELECTRON MICROSCOPY	2.98	949
20	8OIR\|1\|AA	55S human mitochondrial ribosome with mtRF1 and P-site tRNA	ELECTRON MICROSCOPY	3.1	950
21	8OIS\|1\|AA	28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA	ELECTRON MICROSCOPY	3	950
22	3J9M\|1\|AA	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	923
23	7A5I\|1\|A6	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.7	928
24	7A5G\|1\|A6	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	ELECTRON MICROSCOPY	4.33	928
25	7A5F\|1\|A6	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	ELECTRON MICROSCOPY	4.4	928
26	7A5K\|1\|A6	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	ELECTRON MICROSCOPY	3.7	928
27	7PO2\|1\|A	Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	ELECTRON MICROSCOPY	3.09	950
28	7PO3\|1\|A	Human mitochondrial ribosome small subunit	ELECTRON MICROSCOPY	2.92	950
29	7PO1\|1\|A	Initiation complex of human mitochondrial ribosome small subunit with IF3	ELECTRON MICROSCOPY	2.92	950
30	6RW5\|1\|A	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	ELECTRON MICROSCOPY	3.14	950
31	6RW4\|1\|A	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	ELECTRON MICROSCOPY	2.97	950
32	7P2E\|1\|A	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	ELECTRON MICROSCOPY	2.4	959
33	7PNZ\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c	ELECTRON MICROSCOPY	3.09	946
34	7PO0\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3	ELECTRON MICROSCOPY	2.9	946
35	7PNX\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a	ELECTRON MICROSCOPY	2.76	946
36	8CST\|1\|A	Human mitochondrial small subunit assembly intermediate (State E)	ELECTRON MICROSCOPY	2.85	886
37	8CSS\|1\|A	Human mitochondrial small subunit assembly intermediate (State D)	ELECTRON MICROSCOPY	2.36	844
38	8CSR\|1\|A	Human mitochondrial small subunit assembly intermediate (State C)	ELECTRON MICROSCOPY	2.54	853
39	8CSU\|1\|A	Human mitochondrial small subunit assembly intermediate (State C*)	ELECTRON MICROSCOPY	3.03	881
40	8CSQ\|1\|A	Human mitochondrial small subunit assembly intermediate (State B)	ELECTRON MICROSCOPY	2.54	802
41	8CSP\|1\|A	Human mitochondrial small subunit assembly intermediate (State A)	ELECTRON MICROSCOPY	2.66	737

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_93855.15 Obsolete

Release history

Parents

Children