Equivalence class NR_all_96332.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4QU7|1|V (rep) | RNA 5'-(*AP*GP*GP*GP*AP*UP)-3' | synthetic construct | Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution | X-ray diffraction | 2.5 | 4 | 2014-08-13 | |||
| 2 | 2KFY|1|B | 5'-R(*AP*GP*GP*GP*AP*U)-3' | NMR structure of the first qRRM of hnRNP F in complex with AGGGAU G-tract RNA | Solution NMR | 6 | 2010-06-09 | |||||
| 3 | 2KG1|1|B | 5'-R(*AP*GP*GP*GP*AP*U)-3' | Structure of the third qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA | Solution NMR | 6 | 2010-06-09 | |||||
| 4 | 2KG0|1|B | 5'-R(*AP*GP*GP*GP*AP*U)-3' | Structure of the second qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA | Solution NMR | 6 | 2010-06-09 | |||||
| 5 | 4QU7|1|U | RNA 5'-(*AP*GP*GP*GP*AP*UP)-3' | synthetic construct | Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution | X-ray diffraction | 2.5 | 3 | 2014-08-13 | |||
| 6 | 4QU7|1|X | RNA 5'-(*AP*GP*GP*GP*AP*UP)-3' | synthetic construct | Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution | X-ray diffraction | 2.5 | 3 | 2014-08-13 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_96332.1 | NR_all_00945.1 | 2.46 | (3) 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (3) 2KFY|1|B, 2KG0|1|B, 2KG1|1|B | (0) |
| NR_all_96332.1 | NR_all_24805.1 | 2.46 | (1) 2KG1|1|B | (5) 2KFY|1|B, 2KG0|1|B, 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (0) |
| NR_all_96332.1 | NR_all_61231.1 | 2.46 | (1) 2KFY|1|B | (5) 2KG0|1|B, 2KG1|1|B, 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (0) |
| NR_all_96332.1 | NR_all_88042.1 | 2.46 | (1) 2KG0|1|B | (5) 2KFY|1|B, 2KG1|1|B, 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_96332.1 | NR_all_17058.1 | 2.93 | (1) 2KG1|1|B | (5) 2KFY|1|B, 2KG0|1|B, 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (0) |
| NR_all_96332.1 | NR_all_22602.1 | 2.93 | (3) 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (3) 2KFY|1|B, 2KG0|1|B, 2KG1|1|B | (0) |
| NR_all_96332.1 | NR_all_31185.1 | 2.93 | (1) 2KFY|1|B | (5) 2KG0|1|B, 2KG1|1|B, 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (0) |
| NR_all_96332.1 | NR_all_59493.1 | 2.93 | (1) 2KG0|1|B | (5) 2KFY|1|B, 2KG1|1|B, 4QU7|1|U, 4QU7|1|V, 4QU7|1|X | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4QU7|1|U | Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution | X-RAY DIFFRACTION | 2.5 | 3 | |
| 2 | 4QU7|1|V | Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution | X-RAY DIFFRACTION | 2.5 | 4 | |
| 3 | 4QU7|1|X | Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution | X-RAY DIFFRACTION | 2.5 | 3 | |
| 4 | 2KG1|1|B | Structure of the third qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA | SOLUTION NMR | 6 | ||
| 5 | 2KG0|1|B | Structure of the second qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA | SOLUTION NMR | 6 | ||
| 6 | 2KFY|1|B | NMR structure of the first qRRM of hnRNP F in complex with AGGGAU G-tract RNA | SOLUTION NMR | 6 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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