Equivalence class NR_all_96683.8 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z4J|1|B (rep) | RNA (5'-R(*UP*UP*UP*U)-3') | Drosophila melanogaster | Structure of Tailor in complex with U4 RNA | X-ray diffraction | 1.82 | 4 | 2018-10-31 | |||
| 2 | 5GMF|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 4 | 2016-11-02 | |||
| 3 | 5GMF|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 4 | 2016-11-02 | |||
| 4 | 6E4P|1|J | RNA (5'-R(P*UP*UP*UP*U)-3') | Trypanosoma brucei | Structure of the T. brucei RRM domain in complex with RNA | X-ray diffraction | 1.95 | 3 | 2018-12-12 | |||
| 5 | 5GMF|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 4 | 2016-11-02 | |||
| 6 | 5GMF|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 4 | 2016-11-02 | |||
| 7 | 5GMG|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 4 | 2016-11-02 | |||
| 8 | 5GMG|1|C | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 4 | 2016-11-02 | |||
| 9 | 6E4P|1|K | RNA (5'-R(P*UP*UP*UP*U)-3') | Trypanosoma brucei | Structure of the T. brucei RRM domain in complex with RNA | X-ray diffraction | 1.95 | 3 | 2018-12-12 | |||
| 10 | 1IBL|1|Z | A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-ray diffraction | 3.11 | 4 | 2001-05-04 | ||||
| 11 | 1IBM|1|Z | A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-ray diffraction | 3.31 | 4 | 2001-05-04 | ||||
| 12 | 3IE1|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 4 | 2009-08-04 | ||||
| 13 | 4DR6|1|V | 5'-R(*UP*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound | X-ray diffraction | 3.3 | 4 | 2012-11-14 | |||
| 14 | 3IE1|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 4 | 2009-08-04 | ||||
| 15 | 3IE1|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 4 | 2009-08-04 | ||||
| 16 | 4DR7|1|V | 5'-R(*UP*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 4 | 2012-11-14 | |||
| 17 | 3IE1|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2 | 2009-08-04 | ||||
| 18 | 3S4G|1|C+ 3S4G|1|B | RNA (5'-R(P*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*U)-3') | Low Resolution Structure of STNV complexed with RNA | X-ray diffraction | 6 | 7 | 2011-08-03 | ||||
| 19 | 2QQP|1|R | RNA (5'-R(*UP*UP*UP*U)-3') | Crystal Structure of Authentic Providence Virus | X-ray diffraction | 3.8 | 4 | 2009-01-20 | ||||
| 20 | 6YS5|1|9 | mRNA | Acinetobacter baumannii | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | Electron microscopy | 3 | 4 | 2020-09-16 | |||
| 21 | 8V9L|1|v | poly-U mRNA | Mycolicibacterium smegmatis MC2 155 | Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6) | Electron microscopy | 3 | 4 | 2024-02-07 | |||
| 22 | 9FIA|1|bG | ulr13 | Toxoplasma gondii | SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii. | Electron microscopy | 3.29 | 4 | 2024-12-11 | |||
| 23 | 6YTF|1|9 | mRNA | Acinetobacter baumannii | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | Electron microscopy | 3 | 4 | 2020-09-16 | |||
| 24 | 1NB7|1|E | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 4 | 2003-03-25 | ||||
| 25 | 1NB7|1|F | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 4 | 2003-03-25 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9FIA|1|bG | SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii. | ELECTRON MICROSCOPY | 3.29 | 4 | |
| 2 | 6E4P|1|J | Structure of the T. brucei RRM domain in complex with RNA | X-RAY DIFFRACTION | 1.95 | 3 | |
| 3 | 6E4P|1|K | Structure of the T. brucei RRM domain in complex with RNA | X-RAY DIFFRACTION | 1.95 | 3 | |
| 4 | 5GMG|1|D | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 | |
| 5 | 5GMF|1|H | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 | |
| 6 | 5GMF|1|F | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 | |
| 7 | 5GMF|1|E | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 | |
| 8 | 5GMF|1|G | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 | |
| 9 | 5GMG|1|C | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 | |
| 10 | 3IE1|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 | |
| 11 | 3IE1|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 | |
| 12 | 3IE1|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 | |
| 13 | 5Z4J|1|B | Structure of Tailor in complex with U4 RNA | X-RAY DIFFRACTION | 1.82 | 4 | |
| 14 | 3S4G|1|C+ 3S4G|1|B | Low Resolution Structure of STNV complexed with RNA | X-RAY DIFFRACTION | 6 | 7 | |
| 15 | 2QQP|1|R | Crystal Structure of Authentic Providence Virus | X-RAY DIFFRACTION | 3.8 | 4 | |
| 16 | 8V9L|1|v | Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6) | ELECTRON MICROSCOPY | 3 | 4 | |
| 17 | 4DR6|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound | X-RAY DIFFRACTION | 3.3 | 4 | |
| 18 | 1IBL|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 4 | |
| 19 | 4DR7|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 4 | |
| 20 | 1IBM|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 4 | |
| 21 | 3IE1|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 | |
| 22 | 1NB7|1|F | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 | |
| 23 | 1NB7|1|E | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 | |
| 24 | 6YTF|1|9 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 4 | |
| 25 | 6YS5|1|9 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 4 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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