Equivalence class NR_all_96870.7 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9R3A|1|Y (rep) | Transfer RNA | A-site tRNA | Escherichia coli | Bacteria | RF00005 | Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain | Electron microscopy | 2.86 | 77 | 2026-01-28 |
| 2 | 7ST2|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | Electron microscopy | 2.9 | 77 | 2022-02-23 |
| 3 | 9RBF|1|Z | Transfer RNA | P-site tRNA-Pro | Escherichia coli | Bacteria | RF00005 | Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC | Electron microscopy | 2.44 | 77 | 2026-06-03 |
| 4 | 7ST6|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation, non-rotated 70S ribosome (Structure I) | Electron microscopy | 3 | 77 | 2022-02-23 |
| 5 | 7SSO|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | Electron microscopy | 3.2 | 77 | 2022-02-23 |
| 6 | 7SSN|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | Electron microscopy | 3.2 | 77 | 2022-02-23 |
| 7 | 7K54|1|5 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | Electron microscopy | 3.2 | 77 | 2021-07-28 |
| 8 | 7K55|1|5 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | Electron microscopy | 3.3 | 77 | 2021-07-28 |
| 9 | 7SSD|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | Electron microscopy | 3.3 | 77 | 2022-02-23 |
| 10 | 7K52|1|5 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | Electron microscopy | 3.4 | 77 | 2021-07-28 |
| 11 | 7K53|1|7 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | Electron microscopy | 3.2 | 77 | 2021-07-28 |
| 12 | 7ST7|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | Electron microscopy | 3.2 | 76 | 2022-02-23 |
| 13 | 7K50|1|7 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | Electron microscopy | 3.4 | 77 | 2021-07-28 |
| 14 | 7SSW|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Late translocation intermediate with EF-G dissociated (Structure VI) | Electron microscopy | 3.8 | 77 | 2022-02-23 |
| 15 | 7K51|1|5 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | Electron microscopy | 3.5 | 77 | 2021-07-28 |
| 16 | 7LV0|1|5 | Transfer RNA | mRNA, tRNAPro | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | Electron microscopy | 3.2 | 77 | 2021-07-28 |
| 17 | 7SSL|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) | Electron microscopy | 3.8 | 77 | 2022-02-23 |
| 18 | 7SS9|1|5 | Transfer RNA | mRNA, tRNA Pro | Escherichia coli K-12 | Bacteria | RF00005 | Late translocation intermediate with EF-G partially dissociated (Structure V) | Electron microscopy | 3.9 | 77 | 2022-02-23 |
| 19 | 8QOA|1|Y | Transfer RNA | A-site tRNA-pro, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 77 | 2024-03-20 |
| 20 | 8QBT|1|6 | Transfer RNA | mRNA, Pro-tRNA | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 77 | 2024-03-20 |
| 21 | 8QBT|1|5 | Transfer RNA | mRNA, Pro-tRNA | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 77 | 2024-03-20 |
| 22 | 9VVI|1|Y | Transfer RNA | A-site tRNA (prolyl-tRNAPro) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of SecM-arrested 70S ribosome with YheS | Electron microscopy | 2.82 | 77 | 2026-06-17 |
| 23 | 9XWO|1|Y | Transfer RNA | A-site tRNA (prolyl-tRNAPro) | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of SecM-arrested 70S ribosome (short SecM) | Electron microscopy | 2.89 | 77 | 2026-06-17 |
Release history
| Release | 4.44 |
|---|---|
| Date | 2026-06-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7SSO|1|5 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | ELECTRON MICROSCOPY | 3.2 | 77 | |
| 2 | 7ST6|1|5 | Pre translocation, non-rotated 70S ribosome (Structure I) | ELECTRON MICROSCOPY | 3 | 77 | |
| 3 | 7K50|1|7 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | ELECTRON MICROSCOPY | 3.4 | 77 | |
| 4 | 7K53|1|7 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
| 5 | 9XWO|1|Y | Cryo-EM structure of SecM-arrested 70S ribosome (short SecM) | ELECTRON MICROSCOPY | 2.89 | 77 | |
| 6 | 8QOA|1|Y | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 77 | |
| 7 | 8QBT|1|5 | E. coli ApdP-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.2 | 77 | |
| 8 | 9R3A|1|Y | Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain | ELECTRON MICROSCOPY | 2.86 | 77 | |
| 9 | 9VVI|1|Y | Cryo-EM structure of SecM-arrested 70S ribosome with YheS | ELECTRON MICROSCOPY | 2.82 | 77 | |
| 10 | 9RBF|1|Z | Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC | ELECTRON MICROSCOPY | 2.44 | 77 | |
| 11 | 8QBT|1|6 | E. coli ApdP-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.2 | 77 | |
| 12 | 7ST2|1|5 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | ELECTRON MICROSCOPY | 2.9 | 77 | |
| 13 | 7K55|1|5 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | ELECTRON MICROSCOPY | 3.3 | 77 | |
| 14 | 7K52|1|5 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | ELECTRON MICROSCOPY | 3.4 | 77 | |
| 15 | 7K54|1|5 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
| 16 | 7K51|1|5 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | ELECTRON MICROSCOPY | 3.5 | 77 | |
| 17 | 7SSD|1|5 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | ELECTRON MICROSCOPY | 3.3 | 77 | |
| 18 | 7SS9|1|5 | Late translocation intermediate with EF-G partially dissociated (Structure V) | ELECTRON MICROSCOPY | 3.9 | 77 | |
| 19 | 7SSW|1|5 | Late translocation intermediate with EF-G dissociated (Structure VI) | ELECTRON MICROSCOPY | 3.8 | 77 | |
| 20 | 7LV0|1|5 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | ELECTRON MICROSCOPY | 3.2 | 77 | |
| 21 | 7SSN|1|5 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | ELECTRON MICROSCOPY | 3.2 | 77 | |
| 22 | 7ST7|1|5 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | ELECTRON MICROSCOPY | 3.2 | 76 | |
| 23 | 7SSL|1|5 | Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) | ELECTRON MICROSCOPY | 3.8 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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