#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17PAL|1|6 (rep)Transfer RNAmRNA, tRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy4.7762022-05-25
27P6Z|1|7Transfer RNAmRNA, tRNA-PheMycoplasma pneumoniae M129BacteriaRF00005Mycoplasma pneumoniae 70S ribosome in untreated cellsElectron microscopy3.5762022-05-25
37PAK|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy5.3762022-05-25
47PHB|1|6Transfer RNAmRNA, tRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy4.9762022-05-25
57PIB|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy4.7762022-05-25
67PI9|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy6.3762022-05-25
77PAI|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy6.7762022-05-25
87PIT|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy5.7762022-05-25
99SKE|1|8Transfer RNAtRNA-PheMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 50S RRF EF-GElectron microscopy4.8512026-09-23
109SL6|1|7Transfer RNAtRNA-PheMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 70S eT-TC (flexible)Electron microscopy5.8762026-09-23
117PAM|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy6.8762022-05-25
127PAO|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7762022-05-25
137PHB|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy4.9762022-05-25
147PAL|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy4.7762022-05-25
157PAJ|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7.3762022-05-25
167PIB|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy4.7762022-05-25
179SL5|1|7Transfer RNAtRNA-PheMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 70S eT-TC (stable)Electron microscopy6.5762026-09-23
187PHA|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.5762022-05-25
197PAK|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy5.3762022-05-25
207PHA|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.5762022-05-25
217PH9|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.7762022-05-25
227PAR|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.2762022-05-25
237PI9|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy6.3762022-05-25
247PAQ|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.9762022-05-25
257PIT|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy5.7762022-05-25
267PAM|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy6.8762022-05-25
277PIC|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.1762022-05-25
287PI8|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy8.9762022-05-25
299SL4|1|7Transfer RNAtRNA-PheMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 70S eT-TC (collided)Electron microscopy7.2762026-09-23
307PAJ|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7.3762022-05-25
317PIO|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.5762022-05-25
327PAR|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.2762022-05-25
337PAO|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7762022-05-25
347PAH|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.5762022-05-25
357PAN|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.7762022-05-25
367PAJ|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7.3762022-05-25
377PIP|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.3762022-05-25
387PAQ|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.9762022-05-25
397PIP|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.3762022-05-25
407PAN|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.7762022-05-25
417PIQ|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.7762022-05-25
427PHC|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy9.9762022-05-25
437PIQ|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.7762022-05-25
447PIR|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy12.1762022-05-25
457PHC|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy9.9762022-05-25
469SK9|1|6Transfer RNAP-tRNAMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 30S P-tRNAElectron microscopy9.4762026-09-23
477PAH|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.5762022-05-25
487PIR|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy12.1762022-05-25
497PIA|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy13.6762022-05-25
507PIA|1|7Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy13.6762022-05-25
517PIS|1|6Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy15762022-05-25
527PIS|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy15762022-05-25
537PAS|1|8Transfer RNAtRNA-PheMycoplasma pneumoniae M129BacteriaRF0000570S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy16732022-05-25
549SL7|1|7Transfer RNAtRNA-PheMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 70S transertion-like (stable RNAP)Electron microscopy26.7762026-09-23
559SKF|1|7Transfer RNAtRNA-PheMycoplasmoides pneumoniae M129BacteriaRF00005Model of M. pneumoniae 70S membrane complexElectron microscopy8.6762026-09-23

Release history

Release4.58
Date2026-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17PAS|1|870S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY1673
27PIC|1|870S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.176
37PIA|1|770S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY13.676
47PIA|1|870S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY13.676
57PAN|1|870S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.776
67PAN|1|770S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.776
77PAQ|1|870S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.976
87PAQ|1|770S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.976
97PIB|1|770S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.776
107PIB|1|870S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.776
117PIT|1|770S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.776
127PIT|1|870S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.776
137PAO|1|870S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY776
147PAO|1|670S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY776
157PAM|1|670S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.876
167PAM|1|870S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.876
177PIR|1|670S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY12.176
187PIR|1|870S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY12.176
199SKE|1|8Model of M. pneumoniae 50S RRF EF-GELECTRON MICROSCOPY4.851
207PAH|1|870S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.576
217PAH|1|770S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.576
229SKF|1|7Model of M. pneumoniae 70S membrane complexELECTRON MICROSCOPY8.676
239SL5|1|7Model of M. pneumoniae 70S eT-TC (stable)ELECTRON MICROSCOPY6.576
247PAI|1|770S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.776
259SL4|1|7Model of M. pneumoniae 70S eT-TC (collided)ELECTRON MICROSCOPY7.276
269SL6|1|7Model of M. pneumoniae 70S eT-TC (flexible)ELECTRON MICROSCOPY5.876
277PHA|1|770S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.576
287PH9|1|770S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.776
297PAR|1|870S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.276
307PAR|1|770S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.276
317PI8|1|770S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.976
327P6Z|1|7Mycoplasma pneumoniae 70S ribosome in untreated cellsELECTRON MICROSCOPY3.576
337PIO|1|770S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.576
347PAK|1|770S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.376
357PAK|1|670S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.376
367PAJ|1|870S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7.376
377PAJ|1|670S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7.376
387PAJ|1|770S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7.376
397PHB|1|770S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.976
407PHB|1|670S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.976
417PAL|1|770S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.776
427PAL|1|670S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.776
439SK9|1|6Model of M. pneumoniae 30S P-tRNAELECTRON MICROSCOPY9.476
447PIQ|1|670S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.776
457PIQ|1|770S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.776
467PI9|1|770S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.376
477PI9|1|670S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.376
487PHA|1|670S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.576
497PIP|1|770S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.376
507PIP|1|670S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.376
517PHC|1|870S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.976
527PHC|1|670S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.976
537PIS|1|870S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY1576
547PIS|1|670S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY1576
559SL7|1|7Model of M. pneumoniae 70S transertion-like (stable RNAP)ELECTRON MICROSCOPY26.776

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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