#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16FYY|1|1 (rep)Transfer RNAmRNA (31-MER), tRNAiSaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)Electron microscopy3.022018-12-05
26FYX|1|1Transfer RNAmRNA (31-MER), tRNAiSaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)Electron microscopy3.52018-12-05
31YFG|1|ATransfer RNAYEAST INITIATOR TRNASaccharomyces cerevisiaeEukaryaRF00005YEAST INITIATOR TRNAX-ray diffraction31997-09-03
45OA3|1|1Transfer RNAinitiator Met-tRNA-iSaccharomyces cerevisiaeEukaryaRF00005Human 40S-eIF2D-re-initiation complexElectron microscopy4.22017-08-09
53J81|1|1Met-tRNAi, mRNACryoEM structure of a partial yeast 48S preinitiation complexElectron microscopy42014-11-05
66GSM|1|1Transfer RNAMet-tRNAi, mRNA (5'-R(P*AP*AP*U)-3')Saccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex in open conformationElectron microscopy5.152019-07-31
76GSN|1|1Transfer RNAmRNA, tRNAi (75-MER)Saccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex in closed conformationElectron microscopy5.752019-06-26
83JAQ|1|1Transfer RNAMet-tRNAi, mRNASaccharomyces cerevisiaeEukaryaRF00005Structure of a partial yeast 48S preinitiation complex in open conformationElectron microscopy62015-08-12

Release history

Release3.853.863.873.883.893.903.913.923.933.943.953.963.97
Date2019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_99632.5NR_all_99632.43.85(7) 1YFG|1|A, 3J81|1|1, 3JAQ|1|1, 5OA3|1|1, 6FYX|1|1, 6FYY|1|1, 6GSN|1|1(1) 6GSM|1|1(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_99632.5NR_all_46777.13.98(1) 1YFG|1|A(7) 3J81|1|1, 3JAQ|1|1, 5OA3|1|1, 6FYX|1|1, 6FYY|1|1, 6GSM|1|1, 6GSN|1|1(0)
NR_all_99632.5NR_all_77184.13.98(1) 5OA3|1|1(7) 1YFG|1|A, 3J81|1|1, 3JAQ|1|1, 6FYX|1|1, 6FYY|1|1, 6GSM|1|1, 6GSN|1|1(0)
NR_all_99632.5NR_all_99632.63.98(6) 3J81|1|1, 3JAQ|1|1, 6FYX|1|1, 6FYY|1|1, 6GSM|1|1, 6GSN|1|1(2) 1YFG|1|A, 5OA3|1|1(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13J81|1|1CryoEM structure of a partial yeast 48S preinitiation complexELECTRON MICROSCOPY474
26GSN|1|1Structure of a partial yeast 48S preinitiation complex in closed conformationELECTRON MICROSCOPY5.7575
36FYY|1|1Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)ELECTRON MICROSCOPY3.0264
46FYX|1|1Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)ELECTRON MICROSCOPY3.564
56GSM|1|1Structure of a partial yeast 48S preinitiation complex in open conformationELECTRON MICROSCOPY5.1564
63JAQ|1|1Structure of a partial yeast 48S preinitiation complex in open conformationELECTRON MICROSCOPY664
71YFG|1|AYEAST INITIATOR TRNAX-RAY DIFFRACTION364
85OA3|1|1Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.275

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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