IL_1J5E_056

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5E_056 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.36

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

1J5E|1|A|C|1407
1J5E|1|A|A|1408
1J5E|1|A|C|1409
*
1J5E|1|A|G|1491
1J5E|1|A|A|1492
1J5E|1|A|A|1493
1J5E|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12