IL_2OE5_002

3D structure

PDB id

2OE5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang

Experimental method

X-RAY DIFFRACTION

Resolution

1.51 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

1491A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21270.1

Basepair signature

cWW-tSH-cWS-cWW

Number of instances in this motif group

5

Unit IDs

2OE5|1|A|C|1407
2OE5|1|A|G|1408
2OE5|1|A|C|1409
2OE5|1|A|U|1410
*
2OE5|1|B|A|1490
2OE5|1|B|A|1491
2OE5|1|B|A|1492
2OE5|1|B|A|1493
2OE5|1|B|G|1494

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*CP*G)-3')

Chain B

RNA (5'-R(*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*CP*C)-3')

Nearby chains