Motif IL_34618.2 Version IL_34618.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6XJQ_002 | 6XJQ | 0.8933 | 2 | A | Self-alkylating ribozyme (58-MER) | C | 48 | G | 49 | A | 50 | U | 51 | * | A | 10 | A | 13 | G | 14 | cWW | cWS | cWW | |
| 2 | IL_3MEI_004 | 3MEI | 0.1906 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW | |
| 3 | IL_2O3V_003 | 2O3V | 0.1583 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
| 4 | IL_2OE8_002 | 2OE8 | 0.0451 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW | |
| 5 | IL_2OE5_002 | 2OE5 | 0.0000 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW | |
| 6 | IL_2O3Y_003 | 2O3Y | 0.1272 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 4 |
| CGAU*AGAAG | 1 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 4 |
| GA*GAA | 1 |
| GC*CCU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.05 | Avg 0.33 | Max 0.91
Coloring options: