3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CGGUAAA*UU(PSU)AAAUG
Length
15 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8GLP|1|L5|C|1732
8GLP|1|L5|G|1733
8GLP|1|L5|G|1734
8GLP|1|L5|U|1735
8GLP|1|L5|A|1736
8GLP|1|L5|A|1737
8GLP|1|L5|A|1738
*
8GLP|1|L5|U|1790
8GLP|1|L5|U|1791
8GLP|1|L5|PSU|1792
8GLP|1|L5|A|1793
8GLP|1|L5|A|1794
8GLP|1|L5|A|1795
8GLP|1|L5|U|1796
8GLP|1|L5|G|1797

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
60S ribosomal protein L5
Chain LF
60S ribosomal protein L7
Chain LI
60S ribosomal protein L10
Chain LS
60S ribosomal protein L18a
Chain LT
60S ribosomal protein L21

Coloring options:

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