8GLP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8GLP_001 | 1/L5/37:44 | No text annotation HL_48677.1 | ||
| HL_8GLP_002 | 1/L5/68:73 | No text annotation HL_51020.1 | ||
| HL_8GLP_003 | 1/L5/89:95 | No text annotation HL_76371.1 | ||
| HL_8GLP_004 | 1/L5/131:137 | No text annotation HL_02621.1 | ||
| HL_8GLP_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases HL_13999.1 | ||
| HL_8GLP_006 | 1/L5/222:226 | No text annotation HL_75660.6 | ||
| HL_8GLP_007 | 1/L5/230:238 | T-loop with unstacked turn HL_27670.3 | ||
| HL_8GLP_008 | 1/L5/289:298 | No text annotation HL_63894.1 | ||
| HL_8GLP_009 | 1/L5/314:323 | Pseudoknot geometry HL_00911.1 | ||
| HL_8GLP_010 | 1/L5/368:373 | GNRA HL_34789.1 | ||
| HL_8GLP_118 | 1/L5/393:398 | GNRA HL_34789.1 | ||
| HL_8GLP_014 | 1/L5/1178:1183 | Mini UNCG HL_12626.1 | ||
| HL_8GLP_119 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases HL_33597.1 | ||
| HL_8GLP_120 | 1/L5/1364:1373 | No text annotation | ||
| HL_8GLP_018 | 1/L5/1389:1394 | GNRA HL_34789.1 | ||
| HL_8GLP_019 | 1/L5/1406:1411 | No text annotation HL_57900.1 | ||
| HL_8GLP_020 | 1/L5/1436:1448 | No text annotation HL_20751.3 | ||
| HL_8GLP_021 | 1/L5/1480:1484 | Mini UNCG HL_12111.1 | ||
| HL_8GLP_022 | 1/L5/1561:1566 | GNRA HL_34789.1 | ||
| HL_8GLP_023 | 1/L5/1593:1602 | No text annotation HL_50204.1 | ||
| HL_8GLP_024 | 1/L5/1627:1635 | No text annotation HL_79004.1 | ||
| HL_8GLP_025 | 1/L5/1675:1680 | Externally structured HL_27530.1 | ||
| HL_8GLP_027 | 1/L5/1816:1823 | No text annotation HL_63894.1 | ||
| HL_8GLP_028 | 1/L5/1864:1870 | GNRA HL_34789.1 | ||
| HL_8GLP_029 | 1/L5/1886:1893 | No text annotation HL_47171.1 | ||
| HL_8GLP_031 | 1/L5/2257:2261 | Mini UNCG HL_12111.1 | ||
| HL_8GLP_032 | 1/L5/2317:2322 | GNRA HL_34789.1 | ||
| HL_8GLP_033 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases HL_33597.1 | ||
| HL_8GLP_034 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge HL_49081.1 | ||
| HL_8GLP_035 | 1/L5/2458:2463 | GNRA variation HL_34789.1 | ||
| HL_8GLP_036 | 1/L5/2469:2471 | No text annotation | ||
| HL_8GLP_038 | 1/L5/2523:2532 | No text annotation HL_77449.1 | ||
| HL_8GLP_040 | 1/L5/2578:2583 | GNRA HL_34789.1 | ||
| HL_8GLP_121 | 1/L5/2624:2632 | No text annotation HL_68642.1 | ||
| HL_8GLP_042 | 1/L5/2664:2670 | No text annotation HL_67772.1 | ||
| HL_8GLP_043 | 1/L5/2705:2710 | No text annotation HL_89167.1 | ||
| HL_8GLP_044 | 1/L5/2738:2742 | No text annotation HL_90436.1 | ||
| HL_8GLP_045 | 1/L5/2792:2799 | No text annotation HL_28592.1 | ||
| HL_8GLP_046 | 1/L5/2810:2816 | GNRA HL_34789.1 | ||
| HL_8GLP_047 | 1/L5/2872:2877 | No text annotation HL_61337.1 | ||
| HL_8GLP_049 | 1/L5/3614:3618 | No text annotation HL_33678.1 | ||
| HL_8GLP_122 | 1/L5/3639:3649 | No text annotation HL_87681.1 | ||
| HL_8GLP_051 | 1/L5/3668:3674 | GNRA HL_34789.1 | ||
| HL_8GLP_123 | 1/L5/3724:3729 | GNRA HL_34789.1 | ||
| HL_8GLP_053 | 1/L5/3757:3767 | No text annotation HL_82185.1 | ||
| HL_8GLP_054 | 1/L5/3796:3804 | No text annotation HL_77449.1 | ||
| HL_8GLP_055 | 1/L5/3873:3882 | No text annotation HL_78372.1 | ||
| HL_8GLP_057 | 1/L5/4098:4111 | No text annotation HL_68749.1 | ||
| HL_8GLP_059 | 1/L5/4193:4201 | No text annotation HL_11974.1 | ||
| HL_8GLP_060 | 1/L5/4210:4222 | No text annotation HL_02042.1 | ||
| HL_8GLP_061 | 1/L5/4250:4258 | No text annotation HL_02452.1 | ||
| HL_8GLP_062 | 1/L5/4270:4277 | Pseudoknot geometry HL_52651.1 | ||
| HL_8GLP_063 | 1/L5/4301:4309 | No text annotation HL_15296.1 | ||
| HL_8GLP_064 | 1/L5/4321:4326 | GNRA HL_34789.1 | ||
| HL_8GLP_065 | 1/L5/4352:4362 | Pseudoknot geometry HL_06315.1 | ||
| HL_8GLP_066 | 1/L5/4417:4425 | No text annotation HL_52011.1 | ||
| HL_8GLP_067 | 1/L5/4474:4481 | No text annotation HL_46665.1 | ||
| HL_8GLP_068 | 1/L5/4497:4503 | No text annotation HL_48677.1 | ||
| HL_8GLP_069 | 1/L5/4540:4545 | GNRA HL_34789.1 | ||
| HL_8GLP_070 | 1/L5/4603:4608 | GNRA HL_34789.1 | ||
| HL_8GLP_071 | 1/L5/4646:4651 | Ribsomal LSU H95 HL_12125.1 | ||
| HL_8GLP_072 | 1/L5/4688:4702 | No text annotation HL_53269.1 | ||
| HL_8GLP_074 | 1/L5/4907:4914 | No text annotation HL_31089.1 | ||
| HL_8GLP_075 | 1/L5/4975:4983 | No text annotation HL_37889.1 | ||
| HL_8GLP_124 | 1/L7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8GLP_076 | 1/L7/36:41 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_8GLP_077 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.1 | |
| HL_8GLP_078 | 1/L8/47:56 | Pseudoknot with intercalation HL_17803.1 | ||
| HL_8GLP_079 | 1/L8/68:90 | No text annotation | ||
| HL_8GLP_080 | 1/L8/107:112 | No text annotation HL_13184.1 | ||
| HL_8GLP_081 | 1/L8/122:128 | No text annotation HL_34789.1 | ||
| HL_8GLP_082 | 1/Pt/13:23 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_8GLP_083 | 1/Pt/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_8GLP_084 | 1/Pt/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4RDX_003 NA | |
| HL_8GLP_085 | 1/S2/7:17 | No text annotation HL_31940.1 | ||
| HL_8GLP_086 | 1/S2/69:80 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.1 | |
| HL_8GLP_087 | 1/S2/156:162 | GNRA related HL_34789.1 | ||
| HL_8GLP_089 | 1/S2/288:295 | T-loop with 1 bulged base HL_67772.1 | ||
| HL_8GLP_090 | 1/S2/323:327 | Externally structured HL_53014.1 | ||
| HL_8GLP_091 | 1/S2/377:387 | No text annotation HL_50525.1 | ||
| HL_8GLP_092 | 1/S2/416:421 | No text annotation HL_34789.1 | ||
| HL_8GLP_093 | 1/S2/441:452 | No text annotation HL_86432.1 | ||
| HL_8GLP_125 | 1/S2/462:467 | UNCG HL_61337.1 | ||
| HL_8GLP_095 | 1/S2/498:504 | No text annotation HL_89167.1 | ||
| HL_8GLP_097 | 1/S2/569:581 | No text annotation HL_68749.1 | ||
| HL_8GLP_098 | 1/S2/618:623 | GNRA variation HL_93535.2 | ||
| HL_8GLP_099 | 1/S2/820:828 | No text annotation HL_11974.1 | ||
| HL_8GLP_100 | 1/S2/833:841 | No text annotation HL_68791.1 | ||
| HL_8GLP_126 | 1/S2/957:966 | No text annotation HL_38491.1 | ||
| HL_8GLP_103 | 1/S2/994:999 | GNRA HL_34789.1 | ||
| HL_8GLP_104 | 1/S2/1054:1064 | No text annotation HL_38491.1 | ||
| HL_8GLP_105 | 1/S2/1114:1119 | Ribsomal LSU H95 HL_12125.1 | ||
| HL_8GLP_106 | 1/S2/1141:1146 | GNRA HL_34789.1 | ||
| HL_8GLP_107 | 1/S2/1178:1183 | GNRA HL_34789.1 | ||
| HL_8GLP_108 | 1/S2/1245:1254 | No text annotation HL_97521.1 | ||
| HL_8GLP_109 | 1/S2/1295:1304 | Anticodon loop related HL_45359.1 | ||
| HL_8GLP_110 | 1/S2/1353:1358 | GNRA HL_34789.1 | ||
| HL_8GLP_111 | 1/S2/1366:1373 | No text annotation HL_63894.1 | ||
| HL_8GLP_112 | 1/S2/1417:1422 | No text annotation HL_81964.1 | ||
| HL_8GLP_113 | 1/S2/1460:1466 | GNRA HL_76371.1 | ||
| HL_8GLP_114 | 1/S2/1565:1570 | GNRA HL_34789.1 | ||
| HL_8GLP_127 | 1/S2/1614:1625 | No text annotation HL_50951.1 | ||
| HL_8GLP_116 | 1/S2/1658:1666 | No text annotation HL_61418.1 | ||
| HL_8GLP_117 | 1/S2/1847:1852 | GNRA variation HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8GLP_011 | GNRA with extra cWW | ||
| HL_8GLP_012 | No text annotation | ||
| HL_8GLP_013 | No text annotation | ||
| HL_8GLP_015 | No text annotation | ||
| HL_8GLP_016 | No text annotation | ||
| HL_8GLP_017 | No text annotation | ||
| HL_8GLP_026 | No text annotation | ||
| HL_8GLP_030 | No text annotation | ||
| HL_8GLP_037 | No text annotation | ||
| HL_8GLP_039 | UNCG variation | ||
| HL_8GLP_041 | No text annotation | ||
| HL_8GLP_048 | No text annotation | ||
| HL_8GLP_050 | No text annotation | ||
| HL_8GLP_052 | No text annotation | ||
| HL_8GLP_056 | No text annotation | ||
| HL_8GLP_058 | No text annotation | ||
| HL_8GLP_073 | No text annotation | ||
| HL_8GLP_088 | No text annotation | ||
| HL_8GLP_094 | No text annotation | ||
| HL_8GLP_096 | GNRA | ||
| HL_8GLP_101 | tRNA D-loop | ||
| HL_8GLP_102 | No text annotation | ||
| HL_8GLP_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8GLP_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C IL_05642.1 | ||
| IL_8GLP_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U IL_97561.1 | ||
| IL_8GLP_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation IL_15011.1 | ||
| IL_8GLP_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge IL_93502.1 | ||
| IL_8GLP_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation IL_62167.1 | ||
| IL_8GLP_007 | 1/L5/118:121, 1/L5/152:153 | Stack outside cWW IL_36175.1 | ||
| IL_8GLP_287 | 1/L5/118:122, 1/L5/147:153 | No text annotation IL_65996.1 | ||
| IL_8GLP_008 | 1/L5/121:122, 1/L5/147:152 | No text annotation IL_10396.1 | ||
| IL_8GLP_009 | 1/L5/125:126, 1/L5/142:144 | Single bulged C IL_05642.1 | ||
| IL_8GLP_010 | 1/L5/169:173, 1/L5/263:266 | No text annotation | ||
| IL_8GLP_012 | 1/L5/180:182, 1/L5/255:256 | Major groove platform IL_48076.7 | ||
| IL_8GLP_013 | 1/L5/183:185, 1/L5/253:254 | Single bulged U IL_97561.1 | ||
| IL_8GLP_014 | 1/L5/185:189, 1/L5/252:253 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8GLP_015 | 1/L5/195:196, 1/L5/244:246 | Single bulged C IL_05642.1 | ||
| IL_8GLP_016 | 1/L5/199:201, 1/L5/214:215 | Single bulged U IL_97561.1 | ||
| IL_8GLP_017 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform IL_24264.1 | ||
| IL_8GLP_018 | 1/L5/348:350, 1/L8/25:26 | Single bulged A IL_14190.1 | ||
| IL_8GLP_019 | 1/L5/387:390, 1/L5/401:414 | No text annotation IL_44923.1 | ||
| IL_8GLP_021 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW IL_22311.1 | ||
| IL_8GLP_022 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation IL_32983.1 | ||
| IL_8GLP_023 | 1/L5/448:450, 1/L5/1297:1298 | No text annotation IL_05642.1 | ||
| IL_8GLP_024 | 1/L5/459:460, 1/L5/695:697 | Single bulged C IL_05642.1 | ||
| IL_8GLP_025 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_026 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_8GLP_027 | 1/L5/482:485, 1/L5/671:672 | Multiple bulged bases IL_71421.1 | ||
| IL_8GLP_028 | 1/L5/487:488, 1/L5/665:669 | Minor groove platform IL_87975.1 | ||
| IL_8GLP_029 | 1/L5/490:495, 1/L5/659:663 | No text annotation IL_31545.1 | ||
| IL_8GLP_030 | 1/L5/497:499, 1/L5/655:657 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_032 | 1/L5/508:510, 1/L5/649:650 | Single bulged A IL_14190.1 | ||
| IL_8GLP_033 | 1/L5/512:515, 1/L5/646:647 | Minor groove platform IL_24264.1 | ||
| IL_8GLP_034 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G IL_28408.1 | ||
| IL_8GLP_035 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases IL_44609.1 | ||
| IL_8GLP_036 | 1/L5/727:731, 1/L5/938:939 | No text annotation IL_38710.1 | ||
| IL_8GLP_037 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_8GLP_038 | 1/L5/737:740, 1/L5/924:926 | No text annotation IL_44609.1 | ||
| IL_8GLP_039 | 1/L5/740:742, 1/L5/922:924 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_040 | 1/L5/745:752, 1/L5/911:919 | No text annotation IL_25001.1 | ||
| IL_8GLP_041 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A IL_14190.1 | ||
| IL_8GLP_043 | 1/L5/1082:1084, 1/L5/1213:1217 | Isolated cWS basepair IL_42997.4 | ||
| IL_8GLP_044 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C IL_05642.1 | ||
| IL_8GLP_045 | 1/L5/1096:1097, 1/L5/1198:1200 | Single bulged G IL_28408.1 | ||
| IL_8GLP_047 | 1/L5/1173:1175, 1/L5/1186:1188 | Isolated cWH basepair IL_10892.1 | ||
| IL_8GLP_048 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G IL_28408.1 | ||
| IL_8GLP_049 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_8GLP_288 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_8GLP_050 | 1/L5/1360:1361, 1/L5/1376:1379 | Major groove intercalation IL_73464.1 | ||
| IL_8GLP_051 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related IL_47352.1 | ||
| IL_8GLP_052 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared IL_58355.1 | ||
| IL_8GLP_053 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A IL_14190.1 | ||
| IL_8GLP_054 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend IL_15011.1 | ||
| IL_8GLP_055 | 1/L5/1479:1480, 1/L5/1484:1486 | No text annotation IL_05642.1 | ||
| IL_8GLP_289 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_290 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation IL_73855.1 | ||
| IL_8GLP_057 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A IL_14190.1 | ||
| IL_8GLP_058 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G IL_28408.1 | ||
| IL_8GLP_059 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared IL_15190.1 | ||
| IL_8GLP_060 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW IL_36931.1 | ||
| IL_8GLP_061 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U IL_97561.1 | ||
| IL_8GLP_062 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation IL_89509.1 | ||
| IL_8GLP_063 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8GLP_064 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation IL_16315.1 | ||
| IL_8GLP_066 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G IL_28408.1 | ||
| IL_8GLP_291 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_8GLP_292 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_293 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's IL_16301.1 | ||
| IL_8GLP_294 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs IL_71194.1 | ||
| IL_8GLP_295 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair IL_38565.1 | ||
| IL_8GLP_070 | 1/L5/1753:1756, 1/L5/1776:1777 | Major groove minor groove platform; mini C-loop IL_73108.1 | ||
| IL_8GLP_072 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged A IL_28408.1 | ||
| IL_8GLP_297 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair IL_38565.1 | ||
| IL_8GLP_075 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN IL_08938.1 | ||
| IL_8GLP_076 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot IL_11411.1 | ||
| IL_8GLP_077 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G IL_28408.1 | ||
| IL_8GLP_078 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation IL_05642.1 | ||
| IL_8GLP_079 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation IL_39054.1 | ||
| IL_8GLP_080 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation IL_34501.1 | ||
| IL_8GLP_081 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U IL_97561.1 | ||
| IL_8GLP_082 | 1/L5/1957:1965, 1/L5/2022:2026 | Kink-turn IL_99692.3 | ||
| IL_8GLP_083 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation IL_05642.1 | ||
| IL_8GLP_084 | 1/L5/2290:2292, 1/L5/2342:2345 | Isolated cWS basepair IL_42997.4 | ||
| IL_8GLP_085 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A IL_14190.1 | ||
| IL_8GLP_086 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn IL_90775.1 | ||
| IL_8GLP_087 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A IL_14190.1 | ||
| IL_8GLP_300 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge IL_02666.1 | ||
| IL_8GLP_089 | 1/L5/2406:2409, 1/L5/2783:2784 | Major groove platform; stack outside cWW IL_74641.1 | ||
| IL_8GLP_301 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop IL_06671.1 | ||
| IL_8GLP_091 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN IL_08938.1 | ||
| IL_8GLP_092 | 1/L5/2477:2479, 1/L5/2499:2500 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_095 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U IL_97561.1 | ||
| IL_8GLP_096 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared IL_15190.1 | ||
| IL_8GLP_097 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C IL_14190.1 | ||
| IL_8GLP_098 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend IL_15011.1 | ||
| IL_8GLP_099 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges IL_87316.1 | ||
| IL_8GLP_100 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G IL_28408.1 | ||
| IL_8GLP_101 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn IL_93476.1 | ||
| IL_8GLP_102 | 1/L5/2704:2705, 1/L5/2710:2712 | No text annotation IL_28408.1 | ||
| IL_8GLP_302 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation IL_89862.1 | ||
| IL_8GLP_303 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation IL_10432.1 | ||
| IL_8GLP_304 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW IL_74641.1 | ||
| IL_8GLP_305 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation IL_80252.1 | ||
| IL_8GLP_107 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation IL_28217.1 | ||
| IL_8GLP_108 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation IL_20700.1 | ||
| IL_8GLP_109 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_110 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation IL_18824.1 | ||
| IL_8GLP_113 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A IL_14190.1 | ||
| IL_8GLP_114 | 1/L5/3660:3665, 1/L5/3677:3684 | Kink-turn related IL_14684.1 | ||
| IL_8GLP_116 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation IL_73108.1 | ||
| IL_8GLP_117 | 1/L5/3704:3705, 1/L5/3745:3748 | Major groove intercalation IL_71421.1 | ||
| IL_8GLP_119 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend IL_15011.1 | ||
| IL_8GLP_120 | 1/L5/3710:3714, 1/L5/3739:3741 | Minor groove platform with extra cWW IL_84583.1 | ||
| IL_8GLP_306 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation IL_65359.1 | ||
| IL_8GLP_124 | 1/L5/3780:3781, 1/L5/3811:3814 | Bulged stacked bases IL_24886.1 | ||
| IL_8GLP_307 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation IL_84014.1 | ||
| IL_8GLP_127 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation IL_75527.1 | ||
| IL_8GLP_129 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation IL_80025.1 | ||
| IL_8GLP_130 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U IL_97561.1 | ||
| IL_8GLP_131 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_133 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation IL_87316.1 | ||
| IL_8GLP_308 | 1/L5/3944:3946, 1/L5/4067:4069 | No text annotation IL_10892.1 | ||
| IL_8GLP_135 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation IL_52092.1 | ||
| IL_8GLP_136 | 1/L5/4095:4097, 1/L5/4112:4113 | No text annotation IL_05642.1 | ||
| IL_8GLP_137 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A IL_14190.1 | ||
| IL_8GLP_138 | 1/L5/4243:4245, 1/L5/4263:4267 | Isolated tHS basepair with bulges IL_14250.1 | ||
| IL_8GLP_309 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A IL_14190.1 | ||
| IL_8GLP_310 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8GLP_141 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend IL_15011.1 | ||
| IL_8GLP_311 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform IL_48076.7 | ||
| IL_8GLP_312 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair IL_38565.1 | ||
| IL_8GLP_313 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation IL_46637.1 | ||
| IL_8GLP_143 | 1/L5/4405:4407, 1/L5/4435:4439 | Major groove minor groove platform with extra cWW IL_36931.1 | ||
| IL_8GLP_145 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation IL_87767.1 | ||
| IL_8GLP_146 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform IL_46637.1 | ||
| IL_8GLP_314 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation IL_68118.1 | ||
| IL_8GLP_148 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation IL_44609.1 | ||
| IL_8GLP_149 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_315 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_8GLP_150 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation IL_86407.1 | ||
| IL_8GLP_152 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_154 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A IL_14190.1 | ||
| IL_8GLP_157 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation IL_10892.1 | ||
| IL_8GLP_158 | 1/L5/4582:4585, 1/L5/4717:4721 | Double sheared | geometric IL_6E7L_002 NA | |
| IL_8GLP_316 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8GLP_159 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge IL_62167.1 | ||
| IL_8GLP_317 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation IL_12566.5 | ||
| IL_8GLP_318 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related IL_45790.1 | ||
| IL_8GLP_162 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair IL_10892.1 | ||
| IL_8GLP_163 | 1/L5/4641:4642, 1/L5/4655:4658 | Multiple bulged bases IL_44609.1 | ||
| IL_8GLP_164 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW IL_91079.1 | ||
| IL_8GLP_165 | 1/L5/4740:4742, 1/L5/4958:4959 | Single bulged C IL_05642.1 | ||
| IL_8GLP_166 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8GLP_167 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation IL_31990.1 | ||
| IL_8GLP_168 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_8GLP_169 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8GLP_170 | 1/L5/4885:4889, 1/L5/4930:4934 | Triple non-canonical cWW pairs IL_21086.1 | ||
| IL_8GLP_171 | 1/L5/4891:4896, 1/L5/4924:4928 | No text annotation | ||
| IL_8GLP_172 | 1/L5/4899:4901, 1/L5/4920:4921 | Single bulged C IL_05642.1 | ||
| IL_8GLP_319 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs IL_71194.1 | ||
| IL_8GLP_173 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_174 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C IL_05642.1 | ||
| IL_8GLP_175 | 1/L5/5000:5002, 1/L5/5045:5050 | Isolated non-canonical cWW pair IL_00086.1 | ||
| IL_8GLP_176 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_8GLP_178 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged U IL_05642.1 | ||
| IL_8GLP_179 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared IL_58355.1 | ||
| IL_8GLP_180 | 1/L7/15:16, 1/L7/62:64 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_8GLP_181 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | geometric IL_5TBW_373 NA | |
| IL_8GLP_182 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8GLP_183 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_8GLP_184 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.1 | |
| IL_8GLP_185 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_8GLP_186 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_8GLP_187 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW pair IL_68118.1 | ||
| IL_8GLP_320 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair IL_38565.1 | ||
| IL_8GLP_321 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_190 | 1/S2/37:40, 1/S2/514:518 | Double sheared IL_58355.1 | ||
| IL_8GLP_191 | 1/S2/41:47, 1/S2/479:481 | No text annotation IL_88082.2 | ||
| IL_8GLP_192 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_193 | 1/S2/57:62, 1/S2/86:88 | No text annotation IL_61299.5 | ||
| IL_8GLP_194 | 1/S2/63:68, 1/S2/81:85 | No text annotation IL_21667.2 | ||
| IL_8GLP_196 | 1/S2/108:110, 1/S2/351:353 | Stack and bulge IL_71625.1 | ||
| IL_8GLP_197 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_198 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases IL_71421.1 | ||
| IL_8GLP_322 | 1/S2/116:121, 1/S2/343:347 | No text annotation IL_31545.1 | ||
| IL_8GLP_200 | 1/S2/123:124, 1/S2/339:341 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_323 | 1/S2/145:151, 1/S2/167:174 | No text annotation IL_24485.1 | ||
| IL_8GLP_324 | 1/S2/152:154, 1/S2/164:166 | No text annotation IL_10892.1 | ||
| IL_8GLP_204 | 1/S2/188:192, 1/S2/207:211 | Double sheared with non-canonical cWW IL_87767.1 | ||
| IL_8GLP_205 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_8GLP_207 | 1/S2/312:314, 1/S2/336:337 | Single bulged A IL_14190.1 | ||
| IL_8GLP_208 | 1/S2/317:320, 1/S2/331:333 | No text annotation IL_15698.4 | ||
| IL_8GLP_209 | 1/S2/322:323, 1/S2/327:329 | Single bulged U IL_97561.1 | ||
| IL_8GLP_210 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking IL_46174.4 | ||
| IL_8GLP_211 | 1/S2/366:371, 1/S2/393:394 | No text annotation IL_01372.1 | ||
| IL_8GLP_212 | 1/S2/411:413, 1/S2/424:429 | No text annotation IL_93336.1 | ||
| IL_8GLP_213 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair IL_10892.1 | ||
| IL_8GLP_325 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair IL_42997.4 | ||
| IL_8GLP_326 | 1/S2/487:489, 1/S2/511:512 | Single bulged U IL_97561.1 | ||
| IL_8GLP_327 | 1/S2/491:495, 1/S2/508:509 | C-loop IL_26900.1 | ||
| IL_8GLP_215 | 1/S2/495:496, 1/S2/506:508 | Single bulged G IL_28408.1 | ||
| IL_8GLP_217 | 1/S2/535:537, 1/S2/547:549 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_328 | 1/S2/535:538, 1/S2/545:549 | No text annotation IL_20358.1 | ||
| IL_8GLP_218 | 1/S2/537:538, 1/S2/545:547 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_219 | 1/S2/563:565, 1/S2/585:592 | No text annotation IL_02511.1 | ||
| IL_8GLP_220 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs IL_71194.1 | ||
| IL_8GLP_221 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot IL_11411.1 | ||
| IL_8GLP_222 | 1/S2/606:608, 1/S2/635:636 | Single bulged U IL_97561.1 | ||
| IL_8GLP_224 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related IL_52042.1 | ||
| IL_8GLP_225 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_226 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation IL_20847.1 | ||
| IL_8GLP_227 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_228 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS IL_05821.1 | ||
| IL_8GLP_329 | 1/S2/802:803, 1/S2/860:863 | No text annotation IL_73108.1 | ||
| IL_8GLP_231 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8GLP_330 | 1/S2/807:815, 1/S2/849:856 | No text annotation IL_59049.2 | ||
| IL_8GLP_233 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_234 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_235 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW IL_74641.1 | ||
| IL_8GLP_236 | 1/S2/925:927, 1/S2/1014:1017 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_237 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8GLP_238 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8GLP_239 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8GLP_240 | 1/S2/952:956, 1/S2/967:974 | Kink-turn IL_54465.1 | ||
| IL_8GLP_241 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL IL_31359.1 | ||
| IL_8GLP_242 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS IL_05821.1 | ||
| IL_8GLP_243 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation IL_82706.2 | ||
| IL_8GLP_244 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8GLP_245 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair IL_10892.1 | ||
| IL_8GLP_246 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_247 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge IL_84044.1 | ||
| IL_8GLP_249 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A IL_14190.1 | ||
| IL_8GLP_331 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G IL_28408.1 | ||
| IL_8GLP_251 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop IL_63596.12 | ||
| IL_8GLP_332 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair IL_38565.1 | ||
| IL_8GLP_254 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_255 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_341 | 1/S2/1282:1290, 1/S2/1309:1315 | No text annotation | ||
| IL_8GLP_257 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation IL_38565.1 | ||
| IL_8GLP_333 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U IL_97561.1 | ||
| IL_8GLP_259 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair IL_82453.1 | ||
| IL_8GLP_334 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation IL_99893.1 | ||
| IL_8GLP_260 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW IL_93811.1 | ||
| IL_8GLP_335 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A IL_14190.1 | ||
| IL_8GLP_336 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair IL_10892.1 | ||
| IL_8GLP_263 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform IL_34520.1 | ||
| IL_8GLP_337 | 1/S2/1395:1399, 1/S2/1447:1450 | No text annotation IL_15043.1 | ||
| IL_8GLP_266 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform IL_78800.2 | ||
| IL_8GLP_267 | 1/S2/1408:1409, 1/S2/1432:1438 | Multiple bulged bases | geometric IL_1R3E_002 IL_44609.1 | |
| IL_8GLP_268 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G IL_28408.1 | ||
| IL_8GLP_269 | 1/S2/1416:1417, 1/S2/1422:1424 | Single bulged C IL_05642.1 | ||
| IL_8GLP_270 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_338 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_8GLP_271 | 1/S2/1550:1558, 1/S2/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_8GLP_272 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8GLP_273 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_8GLP_274 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation IL_18228.1 | ||
| IL_8GLP_275 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation IL_25873.1 | ||
| IL_8GLP_276 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_277 | 1/S2/1708:1711, 1/S2/1822:1826 | Tandem non-canonical cWW pairs IL_15043.1 | ||
| IL_8GLP_278 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_279 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared IL_58355.1 | ||
| IL_8GLP_280 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U IL_97561.1 | ||
| IL_8GLP_281 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8GLP_282 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared IL_58355.1 | ||
| IL_8GLP_283 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8GLP_284 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared IL_15190.1 | ||
| IL_8GLP_339 | 1/S2/1750:1753, 1/S2/1780:1784 | No text annotation IL_71194.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8GLP_011 | Isolated cWH basepair | ||
| IL_8GLP_020 | Isolated non-canonical cWW pair | ||
| IL_8GLP_031 | Single bulged C | ||
| IL_8GLP_042 | No text annotation | ||
| IL_8GLP_046 | Isolated non-canonical cWW pair | ||
| IL_8GLP_056 | No text annotation | ||
| IL_8GLP_065 | No text annotation | ||
| IL_8GLP_067 | No text annotation | ||
| IL_8GLP_068 | No text annotation | ||
| IL_8GLP_069 | No text annotation | ||
| IL_8GLP_296 | No text annotation | ||
| IL_8GLP_071 | Isolated non-canonical cWW pair | ||
| IL_8GLP_073 | Tandem non-canonical cWW pairs | ||
| IL_8GLP_298 | No text annotation | ||
| IL_8GLP_074 | Tandem non-canonical cWW pairs | ||
| IL_8GLP_299 | No text annotation | ||
| IL_8GLP_088 | Tandem non-canonical cWW pairs | ||
| IL_8GLP_090 | No text annotation | ||
| IL_8GLP_093 | Isolated cWS basepair | ||
| IL_8GLP_094 | Self complementary | ||
| IL_8GLP_103 | No text annotation | ||
| IL_8GLP_104 | Stack and bulge | ||
| IL_8GLP_105 | No text annotation | ||
| IL_8GLP_106 | Major groove platform with extra pair | ||
| IL_8GLP_111 | Isolated non-canonical cWW pair | ||
| IL_8GLP_112 | Isolated non-canonical cWW pair | ||
| IL_8GLP_115 | Stack and bulge | ||
| IL_8GLP_118 | No text annotation | ||
| IL_8GLP_121 | No text annotation | ||
| IL_8GLP_122 | Not an internal loop | ||
| IL_8GLP_123 | Not an internal loop | ||
| IL_8GLP_125 | No text annotation | ||
| IL_8GLP_126 | Stack and bulge | ||
| IL_8GLP_128 | Isolated non-canonical cWW pair | ||
| IL_8GLP_132 | Isolated non-canonical cWW pair | ||
| IL_8GLP_134 | Tandem non-canonical cWW pairs | ||
| IL_8GLP_139 | Decoding loop related | ||
| IL_8GLP_140 | No text annotation | ||
| IL_8GLP_142 | No text annotation | ||
| IL_8GLP_144 | Not an internal loop | ||
| IL_8GLP_147 | No text annotation | ||
| IL_8GLP_151 | Not an internal loop | ||
| IL_8GLP_153 | No text annotation | ||
| IL_8GLP_155 | Isolated non-canonical cWW pair | ||
| IL_8GLP_156 | Stack and bulge | ||
| IL_8GLP_160 | No text annotation | ||
| IL_8GLP_161 | No text annotation | ||
| IL_8GLP_177 | Stack and bulge | ||
| IL_8GLP_188 | Partly complementary | ||
| IL_8GLP_189 | Isolated non-canonical cWW pair | ||
| IL_8GLP_195 | Isolated non-canonical cWW pair | ||
| IL_8GLP_199 | No text annotation | ||
| IL_8GLP_201 | No text annotation | ||
| IL_8GLP_202 | No text annotation | ||
| IL_8GLP_203 | Tandem non-canonical cWW pairs | ||
| IL_8GLP_206 | No text annotation | ||
| IL_8GLP_214 | No text annotation | ||
| IL_8GLP_216 | Single bulged A | ||
| IL_8GLP_223 | Not an internal loop | ||
| IL_8GLP_229 | Stack and bulge | ||
| IL_8GLP_230 | No text annotation | ||
| IL_8GLP_232 | No text annotation | ||
| IL_8GLP_248 | Stack and bulge | ||
| IL_8GLP_250 | Intercalated cWW | ||
| IL_8GLP_252 | Isolated cWS basepair | ||
| IL_8GLP_253 | Tandem non-canonical cWW pairs | ||
| IL_8GLP_256 | No text annotation | ||
| IL_8GLP_258 | Isolated non-canonical cWW pair | ||
| IL_8GLP_261 | Isolated non-canonical cWW pair | ||
| IL_8GLP_262 | No text annotation | ||
| IL_8GLP_264 | Other IL | ||
| IL_8GLP_265 | Isolated non-canonical cWW pair | ||
| IL_8GLP_285 | No text annotation | ||
| IL_8GLP_340 | Single stack bend | ||
| IL_8GLP_286 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8GLP_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_8GLP_023 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_8GLP_024 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation J3_07616.1 | ||
| J3_8GLP_025 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation J3_68715.1 | ||
| J3_8GLP_026 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation J3_17917.1 | ||
| J3_8GLP_027 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_8GLP_028 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_8GLP_002 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation J3_46658.1 | ||
| J3_8GLP_003 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation J3_69816.1 | ||
| J3_8GLP_029 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation J3_84137.1 | ||
| J3_8GLP_004 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation J3_05025.1 | ||
| J3_8GLP_005 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation J3_76012.1 | ||
| J3_8GLP_030 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation J3_94309.1 | ||
| J3_8GLP_031 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation J3_53783.1 | ||
| J3_8GLP_006 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_8GLP_032 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation J3_05348.1 | ||
| J3_8GLP_033 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation J3_08594.1 | ||
| J3_8GLP_007 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation J3_17460.1 | ||
| J3_8GLP_008 | 1/L5/4091:4094, 1/L5/4114:4129, 1/L5/4155:4158 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_8GLP_034 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation J3_04772.1 | ||
| J3_8GLP_009 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation J3_05327.1 | ||
| J3_8GLP_035 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation J3_44047.1 | ||
| J3_8GLP_036 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_8GLP_037 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_8GLP_038 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8GLP_039 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation J3_01004.1 | ||
| J3_8GLP_040 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation J3_58657.1 | ||
| J3_8GLP_041 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation J3_63856.1 | ||
| J3_8GLP_042 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_8GLP_043 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_8GLP_013 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation J3_97642.2 | ||
| J3_8GLP_044 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation J3_23895.1 | ||
| J3_8GLP_045 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_8GLP_016 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation J3_85722.1 | ||
| J3_8GLP_017 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation J3_44359.1 | ||
| J3_8GLP_046 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation J3_88451.1 | ||
| J3_8GLP_019 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation J3_87797.2 | ||
| J3_8GLP_020 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation J3_17077.1 | ||
| J3_8GLP_047 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation J3_76043.4 | ||
| J3_8GLP_048 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_8GLP_022 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation J3_03192.1 | ||
| J4_8GLP_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation J4_94698.1 | ||
| J4_8GLP_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_8GLP_003 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_8GLP_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_8GLP_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation J4_77353.1 | ||
| J4_8GLP_006 | 1/L5/2409:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2783 | No text annotation J4_48150.1 | ||
| J4_8GLP_007 | 1/L5/2451:2456, 1/L5/2465:2469, 1/L5/2471:2476, 1/L5/2501:2508 | No text annotation | ||
| J4_8GLP_008 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_8GLP_009 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation J4_78485.1 | ||
| J4_8GLP_010 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation J4_21738.1 | ||
| J4_8GLP_011 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_8GLP_012 | 1/L5/4231:4235, 1/L5/4289:4293, 1/L5/4317:4319, 1/L5/4328:4330 | No text annotation J4_59590.1 | ||
| J4_8GLP_013 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation J4_69783.1 | ||
| J4_8GLP_014 | 1/Pt/7:10, 1/Pt/26:28, 1/Pt/44:50, 1/Pt/66:67 | tRNA junction | homologous J4_7VNV_001 J4_58311.1 | |
| J4_8GLP_015 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation J4_15241.2 | ||
| J4_8GLP_016 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation J4_14595.1 | ||
| J5_8GLP_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation J5_27223.1 | ||
| J5_8GLP_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation J5_08384.1 | ||
| J5_8GLP_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation J5_99177.1 | ||
| J5_8GLP_004 | 1/L5/3903:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation J5_53110.1 | ||
| J5_8GLP_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation J5_96125.1 | ||
| J5_8GLP_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation J5_04786.1 | ||
| J5_8GLP_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation J5_02492.2 | ||
| J5_8GLP_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation J5_58574.1 | ||
| J5_8GLP_010 | 1/S2/125:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:338 | No text annotation | ||
| J6_8GLP_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_8GLP_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_8GLP_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation J6_84807.1 | ||
| J7_8GLP_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation J7_60081.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8GLP_010 | No text annotation | ||
| J3_8GLP_011 | No text annotation | ||
| J3_8GLP_012 | No text annotation | ||
| J3_8GLP_014 | No text annotation | ||
| J3_8GLP_015 | No text annotation | ||
| J3_8GLP_018 | No text annotation | ||
| J3_8GLP_021 | No text annotation | ||
| J5_8GLP_009 | No text annotation |
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