RNA 3D Hub //

8GLP Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8GLP_0011/L5/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_8GLP_0021/L5/68:73No text annotation
homologous
HL_5TBW_002
NA
HL_8GLP_0031/L5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_8GLP_0041/L5/131:137No text annotation
HL_8GLP_0051/L5/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8GLP_0061/L5/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_8GLP_0071/L5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_8GLP_0081/L5/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_8GLP_0091/L5/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8GLP_0101/L5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_8GLP_1181/L5/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8GLP_0141/L5/1178:1183Mini UNCG
geometric
HL_4QOZ_001
HL_56334.1
HL_8GLP_0151/L5/1252:1258No text annotation
HL_8GLP_1191/L5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8P9A_126
HL_28252.7
HL_8GLP_1201/L5/1364:1373No text annotation
HL_8GLP_0181/L5/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_8GLP_0191/L5/1406:1411No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_8GLP_0201/L5/1436:1448No text annotation
HL_8GLP_0211/L5/1480:1484Mini UNCG
geometric
HL_4V9F_041
HL_48778.2
HL_8GLP_0221/L5/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_8GLP_0231/L5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_8GLP_0241/L5/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_8GLP_0251/L5/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_8GLP_0261/L5/1764:1768No text annotation
geometric
HL_5TBW_044
NA
HL_8GLP_0271/L5/1816:1823No text annotation
geometric
HL_5TBW_024
NA
HL_8GLP_0281/L5/1864:1870GNRA
geometric
HL_5TBW_025
NA
HL_8GLP_0291/L5/1886:1893No text annotation
homologous
HL_8C3A_026
NA
HL_8GLP_0311/L5/2257:2261Mini UNCG
geometric
HL_4V9F_041
HL_48778.2
HL_8GLP_0321/L5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8GLP_0331/L5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8GLP_0341/L5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8GLP_0351/L5/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_8GLP_0361/L5/2469:2471No text annotation
HL_8GLP_0371/L5/2487:2491No text annotation
HL_8GLP_0381/L5/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_8GLP_0391/L5/2561:2566UNCG variation
geometric
HL_2CZJ_007
NA
HL_8GLP_0401/L5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_8GLP_1211/L5/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_8GLP_0421/L5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_8GLP_0431/L5/2705:2710No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_8GLP_0441/L5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8GLP_0451/L5/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_8GLP_0461/L5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_8GLP_0471/L5/2872:2877No text annotation
geometric
HL_7RQB_042
NA
HL_8GLP_0491/L5/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_8GLP_1221/L5/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_8GLP_0511/L5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_8GLP_1231/L5/3724:3729GNRA
homologous
HL_8P9A_159
HL_37824.7
HL_8GLP_0531/L5/3757:3767No text annotation
homologous
HL_8C3A_049
NA
HL_8GLP_0541/L5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_8GLP_0551/L5/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_8GLP_0571/L5/4098:4111No text annotation
HL_8GLP_0581/L5/4139:4145No text annotation
HL_8GLP_0591/L5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_8GLP_0601/L5/4210:4222No text annotation
homologous
HL_8P9A_166
HL_91939.2
HL_8GLP_0611/L5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_8GLP_0621/L5/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8GLP_0631/L5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_8GLP_0641/L5/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_8GLP_0651/L5/4352:4362Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_8GLP_0661/L5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_8GLP_0671/L5/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_8GLP_0681/L5/4497:4503No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_8GLP_0691/L5/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_8GLP_0701/L5/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_8GLP_0711/L5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8GLP_0721/L5/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8GLP_0741/L5/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_8GLP_0751/L5/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8GLP_1241/L7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8GLP_0761/L7/36:41No text annotation
homologous
HL_7RQB_070
NA
HL_8GLP_0771/L7/86:91GNRA
homologous
HL_4V9F_072
HL_37824.7
HL_8GLP_0781/L8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_93438.2
HL_8GLP_0791/L8/68:90No text annotation
HL_8GLP_0801/L8/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_8GLP_0811/L8/122:128No text annotation
HL_8GLP_0821/Pt/13:23No text annotation
homologous
HL_4LCK_001
NA
HL_8GLP_0831/Pt/32:40tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.5
HL_8GLP_0841/Pt/54:62T-loop with 2 stacked bulged bases
homologous
HL_4RDX_003
HL_28252.7
HL_8GLP_0851/S2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_8GLP_0861/S2/69:80Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_8GLP_0871/S2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_8GLP_0881/S2/196:203No text annotation
geometric
HL_8C3A_221
NA
HL_8GLP_0891/S2/288:295T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_8GLP_0901/S2/323:327Externally structured
geometric
HL_8C3A_022
NA
HL_8GLP_0911/S2/377:387No text annotation
HL_8GLP_0921/S2/416:421No text annotation
homologous
HL_4V88_194
NA
HL_8GLP_0931/S2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_8GLP_1251/S2/462:467UNCG
homologous
HL_8C3A_202
NA
HL_8GLP_0951/S2/498:504No text annotation
homologous
HL_4V88_197
NA
HL_8GLP_0961/S2/539:544GNRA
geometric
HL_6AZ4_001
HL_37824.7
HL_8GLP_0971/S2/569:581No text annotation
homologous
HL_4V88_199
NA
HL_8GLP_0981/S2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_8GLP_0991/S2/820:828No text annotation
homologous
HL_4V88_203
NA
HL_8GLP_1001/S2/833:841No text annotation
geometric
HL_361D_002
HL_13963.3
HL_8GLP_1011/S2/885:901tRNA D-loop
geometric
HL_7UQ6_001
HL_20811.4
HL_8GLP_1261/S2/957:966No text annotation
homologous
HL_8C3A_211
NA
HL_8GLP_1031/S2/994:999GNRA
homologous
HL_4V88_207
NA
HL_8GLP_1041/S2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_8GLP_1051/S2/1114:1119Ribsomal LSU H95
geometric
HL_5TBW_066
NA
HL_8GLP_1061/S2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_8GLP_1071/S2/1178:1183GNRA
geometric
HL_1Q96_001
HL_37824.7
HL_8GLP_1081/S2/1245:1254No text annotation
homologous
HL_8C3A_217
NA
HL_8GLP_1091/S2/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_8GLP_1101/S2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_8GLP_1111/S2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_8GLP_1121/S2/1417:1422No text annotation
HL_8GLP_1131/S2/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_8GLP_1141/S2/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_8GLP_1271/S2/1614:1625No text annotation
homologous
HL_8C3A_224
NA
HL_8GLP_1161/S2/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_8GLP_1171/S2/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_8GLP_011GNRA with extra cWW
HL_8GLP_012No text annotation
HL_8GLP_013No text annotation
HL_8GLP_016No text annotation
HL_8GLP_017No text annotation
HL_8GLP_030No text annotation
HL_8GLP_041No text annotation
HL_8GLP_048No text annotation
HL_8GLP_050No text annotation
HL_8GLP_052No text annotation
HL_8GLP_056No text annotation
HL_8GLP_073No text annotation
HL_8GLP_094No text annotation
HL_8GLP_102No text annotation
HL_8GLP_115No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8GLP_0011/L5/6:7,
1/L8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_8GLP_0021/L5/12:14,
1/L8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_8GLP_0031/L5/16:18,
1/L8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_8GLP_0041/L5/26:27,
1/L5/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_8GLP_0051/L5/30:37,
1/L5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_8GLP_0061/L5/81:88,
1/L5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_8GLP_0071/L5/118:121,
1/L5/152:153		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_8GLP_2871/L5/118:122,
1/L5/147:153		No text annotation
IL_8GLP_0081/L5/121:122,
1/L5/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_8GLP_0091/L5/125:126,
1/L5/142:144		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_8GLP_0101/L5/169:173,
1/L5/263:266		No text annotation
IL_8GLP_0121/L5/180:182,
1/L5/255:256		Major groove platform
geometric
IL_4WF9_026
IL_48076.6
IL_8GLP_0131/L5/183:185,
1/L5/253:254		Single bulged U
geometric
IL_7PMQ_002
IL_89505.4
IL_8GLP_0141/L5/185:189,
1/L5/252:253		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_8GLP_0151/L5/195:196,
1/L5/244:246		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_8GLP_0161/L5/199:201,
1/L5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8GLP_0171/L5/339:342,
1/L8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_8GLP_0181/L5/348:350,
1/L8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8GLP_0191/L5/387:390,
1/L5/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_8GLP_0211/L5/415:421,
1/L8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8GLP_0221/L5/443:446,
1/L5/1300:1304		No text annotation
IL_8GLP_0231/L5/448:450,
1/L5/1297:1298		No text annotation
IL_8GLP_0241/L5/459:460,
1/L5/695:697		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_8GLP_0251/L5/462:464,
1/L5/691:693		Isolated non-canonical cWW pair
geometric
IL_5ED1_002
IL_87907.2
IL_8GLP_0261/L5/466:472,
1/L5/682:689		No text annotation
IL_8GLP_0271/L5/482:485,
1/L5/671:672		Multiple bulged bases
geometric
IL_5XWP_001
IL_82107.4
IL_8GLP_0281/L5/487:488,
1/L5/665:669		Minor groove platform
geometric
IL_5J7L_247
IL_51454.2
IL_8GLP_0291/L5/490:495,
1/L5/659:663		No text annotation
IL_8GLP_0301/L5/497:499,
1/L5/655:657		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_8GLP_0321/L5/508:510,
1/L5/649:650		Single bulged A
geometric
IL_6WPI_001
IL_31462.5
IL_8GLP_0331/L5/512:515,
1/L5/646:647		Minor groove platform
geometric
IL_3RW6_003
IL_95583.2
IL_8GLP_0341/L5/709:710,
1/L5/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_00225.13
IL_8GLP_0351/L5/723:724,
1/L5/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8GLP_0361/L5/727:731,
1/L5/938:939		No text annotation
IL_8GLP_0371/L5/732:735,
1/L5/928:937		No text annotation
IL_8GLP_0381/L5/737:740,
1/L5/924:926		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_8GLP_0391/L5/740:742,
1/L5/922:924		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_87907.2
IL_8GLP_0401/L5/745:752,
1/L5/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_8GLP_0411/L5/1073:1074,
1/L5/1237:1239		Single bulged A
geometric
IL_4R4V_003
IL_31462.5
IL_8GLP_0431/L5/1082:1084,
1/L5/1213:1217		Isolated cWS basepair
geometric
IL_4WF9_034
NA
IL_8GLP_0441/L5/1086:1087,
1/L5/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_8GLP_0451/L5/1096:1097,
1/L5/1198:1200		Single bulged G
geometric
IL_4V9F_041
IL_00225.13
IL_8GLP_0471/L5/1173:1175,
1/L5/1186:1188		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.5
IL_8GLP_0481/L5/1244:1245,
1/L5/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_8GLP_0491/L5/1357:1360,
1/L5/1379:1382		No text annotation
IL_8GLP_2881/L5/1357:1361,
1/L5/1376:1382		No text annotation
IL_8GLP_0501/L5/1360:1361,
1/L5/1376:1379		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.4
IL_8GLP_0511/L5/1425:1429,
1/L5/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_8GLP_0521/L5/1431:1434,
1/L5/1450:1453		Double sheared
geometric
IL_1SA9_002
IL_09705.15
IL_8GLP_0531/L5/1467:1468,
1/L5/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_8GLP_0541/L5/1474:1476,
1/L5/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_8GLP_0551/L5/1479:1480,
1/L5/1484:1486		No text annotation
IL_8GLP_2891/L5/1520:1522,
1/L5/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8P9A_255
IL_87907.2
IL_8GLP_2901/L5/1522:1526,
1/L5/1648:1655		No text annotation
homologous
IL_8P9A_256
IL_54041.2
IL_8GLP_0571/L5/1545:1546,
1/L5/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_8GLP_0581/L5/1550:1551,
1/L5/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_00225.13
IL_8GLP_0591/L5/1551:1555,
1/L5/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_8GLP_0601/L5/1586:1589,
1/L5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8GLP_0611/L5/1590:1592,
1/L5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_8GLP_0621/L5/1624:1626,
1/L5/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_8GLP_0631/L5/1671:1673,
1/L5/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8GLP_0641/L5/1686:1688,
1/L5/1848:1851		No text annotation
IL_8GLP_0661/L5/1723:1725,
1/L5/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8GLP_2911/L5/1732:1737,
1/L5/1792:1797		No text annotation
IL_8GLP_2921/L5/1737:1738,
1/L5/1790:1792		Minor groove platform
homologous
IL_8C3A_042
NA
IL_8GLP_2931/L5/1739:1744,
1/L5/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8GLP_2941/L5/1746:1749,
1/L5/1781:1784		No text annotation
homologous
IL_8P9A_269
IL_77658.1
IL_8GLP_2951/L5/1749:1751,
1/L5/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_8GLP_0701/L5/1753:1756,
1/L5/1776:1777		Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_68140.4
IL_8GLP_0711/L5/1761:1763,
1/L5/1769:1771		Isolated non-canonical cWW pair
geometric
IL_1U9S_007
IL_87907.2
IL_8GLP_0721/L5/1814:1816,
1/L5/1823:1824		Single bulged A
homologous
IL_5TBW_045
NA
IL_8GLP_2971/L5/1858:1860,
1/L5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_87907.2
IL_8GLP_0751/L5/1905:1909,
1/L5/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8GLP_0761/L5/1911:1918,
1/L5/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_8GLP_0771/L5/1918:1920,
1/L5/2063:2064		Single bulged G
geometric
IL_7D7V_002
IL_00225.13
IL_8GLP_0781/L5/1920:1922,
1/L5/2062:2063		No text annotation
IL_8GLP_0791/L5/1926:1933,
1/L5/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_8GLP_0801/L5/1933:1944,
1/L5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_8GLP_0811/L5/1946:1948,
1/L5/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_8GLP_0821/L5/1957:1965,
1/L5/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_8GLP_0831/L5/2083:2085,
1/L5/2272:2273		No text annotation
IL_8GLP_0841/L5/2290:2292,
1/L5/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_8GLP_0851/L5/2299:2301,
1/L5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8GLP_0861/L5/2302:2309,
1/L5/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_8GLP_0871/L5/2312:2314,
1/L5/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_8GLP_3001/L5/2358:2364,
1/L5/3858:3863		No text annotation
homologous
IL_8P9A_289
IL_26307.2
IL_8GLP_0891/L5/2406:2409,
1/L5/2783:2784		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_8GLP_3011/L5/2415:2419,
1/L5/2427:2429		C-loop
homologous
IL_8C3A_482
NA
IL_8GLP_0911/L5/2446:2450,
1/L5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8GLP_0921/L5/2477:2479,
1/L5/2499:2500		Minor groove platform
geometric
IL_5TBW_039
NA
IL_8GLP_0951/L5/2549:2550,
1/L5/2768:2770		Single bulged U
geometric
IL_2A64_002
IL_89505.4
IL_8GLP_0961/L5/2589:2593,
1/L5/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_8GLP_0971/L5/2613:2614,
1/L5/2724:2726		Single bulged C
homologous
IL_5TBW_069
NA
IL_8GLP_0981/L5/2614:2615,
1/L5/2722:2724		Single stack bend
geometric
IL_5TBW_070
NA
IL_8GLP_0991/L5/2646:2648,
1/L5/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_8GLP_1001/L5/2651:2653,
1/L5/2681:2682		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_8GLP_1011/L5/2656:2662,
1/L5/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_8GLP_1021/L5/2704:2705,
1/L5/2710:2712		No text annotation
IL_8GLP_3021/L5/2832:2838,
1/L5/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_8GLP_3031/L5/2844:2846,
1/L5/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_8GLP_3041/L5/2847:2850,
1/L5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8GLP_3051/L5/2847:2855,
1/L5/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_8GLP_1071/L5/2850:2855,
1/L5/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_8GLP_1081/L5/2867:2872,
1/L5/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_8GLP_1091/L5/2889:2891,
1/L5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8GLP_1101/L5/2896:2897,
1/L5/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_8GLP_1131/L5/3632:3633,
1/L5/3827:3829		Single bulged A
geometric
IL_7RQB_069
NA
IL_8GLP_1141/L5/3660:3665,
1/L5/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8GLP_1161/L5/3700:3703,
1/L5/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_8GLP_1171/L5/3704:3705,
1/L5/3745:3748		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_8GLP_1191/L5/3708:3710,
1/L5/3741:3742		Single stack bend
homologous
IL_8C3A_091
NA
IL_8GLP_1201/L5/3710:3714,
1/L5/3739:3741		Minor groove platform with extra cWW
geometric
IL_4WF9_003
IL_90351.1
IL_8GLP_3061/L5/3715:3721,
1/L5/3732:3738		No text annotation
homologous
IL_8P9A_316
IL_88116.2
IL_8GLP_1241/L5/3780:3781,
1/L5/3811:3814		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_8GLP_3071/L5/3781:3792,
1/L5/3808:3811		No text annotation
homologous
IL_8C3A_095
NA
IL_8GLP_1271/L5/3895:3898,
1/L5/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_8GLP_1291/L5/3900:3902,
1/L5/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_8GLP_1301/L5/3913:3915,
1/L5/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_8GLP_1311/L5/3916:3917,
1/L5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8GLP_1331/L5/3927:3929,
1/L5/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_8GLP_3081/L5/3944:3946,
1/L5/4067:4069		No text annotation
homologous
IL_8C3A_101
NA
IL_8GLP_1351/L5/4082:4088,
1/L5/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_8GLP_1361/L5/4095:4097,
1/L5/4112:4113		No text annotation
IL_8GLP_1371/L5/4191:4192,
1/L5/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_8GLP_1381/L5/4243:4245,
1/L5/4263:4267		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_8GLP_3091/L5/4291:4293,
1/L5/4317:4318		Single bulged A
geometric
IL_7A0S_064
IL_31462.5
IL_8GLP_3101/L5/4295:4298,
1/L5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_8GLP_1411/L5/4347:4350,
1/L5/4364:4365		Single stack bend
geometric
IL_7RQB_058
NA
IL_8GLP_3111/L5/4400:4401,
1/L5/4442:4444		Major groove platform
homologous
IL_8P9A_329
IL_48076.6
IL_8GLP_3121/L5/4401:4403,
1/L5/4440:4442		Isolated non-canonical cWW pair
homologous
IL_8P9A_330
IL_87907.2
IL_8GLP_3131/L5/4403:4405,
1/L5/4439:4440		No text annotation
homologous
IL_8P9A_331
IL_07039.3
IL_8GLP_1431/L5/4405:4407,
1/L5/4435:4439		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_8GLP_1451/L5/4412:4416,
1/L5/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_8GLP_1461/L5/4453:4454,
1/L5/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_8GLP_3141/L5/4456:4458,
1/L5/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_8GLP_1481/L5/4458:4459,
1/L5/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_8GLP_1491/L5/4466:4468,
1/L5/4489:4491		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8GLP_3151/L5/4466:4470,
1/L5/4485:4491		No text annotation
IL_8GLP_1501/L5/4468:4470,
1/L5/4485:4489		No text annotation
geometric
IL_3DD2_004
IL_55516.2
IL_8GLP_1521/L5/4495:4497,
1/L5/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_8GLP_1541/L5/4537:4538,
1/L5/4547:4549		Single bulged A
geometric
IL_7RQB_101
NA
IL_8GLP_1571/L5/4580:4582,
1/L5/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_8GLP_1581/L5/4582:4585,
1/L5/4717:4721		Double sheared
geometric
IL_6E7L_002
IL_10484.1
IL_8GLP_3161/L5/4590:4592,
1/L5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_28037.2
IL_8GLP_1591/L5/4596:4603,
1/L5/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8GLP_3171/L5/4624:4629,
1/L5/4669:4673		No text annotation
IL_8GLP_3181/L5/4632:4637,
1/L5/4662:4666		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_8GLP_1621/L5/4638:4640,
1/L5/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10167.5
IL_8GLP_1631/L5/4641:4642,
1/L5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8GLP_1641/L5/4680:4685,
1/L5/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_8GLP_1651/L5/4740:4742,
1/L5/4958:4959		Single bulged C
geometric
IL_3DIL_001
IL_61258.15
IL_8GLP_1661/L5/4743:4746,
1/L5/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8GLP_1671/L5/4749:4751,
1/L5/4948:4951		No text annotation
IL_8GLP_1681/L5/4756:4765,
1/L5/4869:4877		No text annotation
IL_8GLP_1691/L5/4769:4771,
1/L5/4863:4865		Isolated non-canonical cWW pair
geometric
IL_7A0S_078
IL_28037.2
IL_8GLP_1701/L5/4885:4889,
1/L5/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_49751.4
IL_8GLP_1711/L5/4891:4896,
1/L5/4924:4928		No text annotation
IL_8GLP_1721/L5/4899:4901,
1/L5/4920:4921		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_8GLP_3191/L5/4972:4975,
1/L5/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_3TZR_003
IL_77658.1
IL_8GLP_1731/L5/4992:4994,
1/L5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_87907.2
IL_8GLP_1741/L5/4996:4997,
1/L5/5053:5055		Single bulged C
geometric
IL_7RQB_108
NA
IL_8GLP_1751/L5/5000:5002,
1/L5/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8GLP_1761/L5/5003:5009,
1/L5/5039:5044		No text annotation
IL_8GLP_1781/L5/5012:5014,
1/L5/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_8GLP_1791/L5/5014:5017,
1/L5/5032:5035		Double sheared
geometric
IL_4V9F_100
IL_09705.15
IL_8GLP_1801/L7/15:16,
1/L7/62:64		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_8GLP_1811/L7/21:27,
1/L7/52:57		Minor groove platform related
geometric
IL_5TBW_373
NA
IL_8GLP_1821/L7/28:29,
1/L7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_8GLP_1831/L7/32:36,
1/L7/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_8GLP_1841/L7/71:78,
1/L7/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_8GLP_1851/L7/79:81,
1/L7/95:97		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_8GLP_1861/L7/82:85,
1/L7/92:94		Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_8GLP_1871/L8/64:66,
1/L8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8GLP_3201/S2/23:25,
1/S2/649:651		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_07785.1
IL_8GLP_3211/S2/34:36,
1/S2/519:521		Isolated non-canonical cWW pair
homologous
IL_8C3A_393
NA
IL_8GLP_1901/S2/37:40,
1/S2/514:518		Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_8GLP_1911/S2/41:47,
1/S2/479:481		No text annotation
homologous
IL_4V88_387
NA
IL_8GLP_1921/S2/49:51,
1/S2/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_8GLP_1931/S2/57:62,
1/S2/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_8GLP_1941/S2/63:68,
1/S2/81:85		No text annotation
homologous
IL_4V88_390
NA
IL_8GLP_1961/S2/108:110,
1/S2/351:353		Stack and bulge
geometric
IL_2O3X_001
IL_31737.3
IL_8GLP_1971/S2/110:112,
1/S2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_8GLP_1981/S2/112:115,
1/S2/348:349		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_8GLP_3221/S2/116:121,
1/S2/343:347		No text annotation
homologous
IL_8P9A_382
IL_29223.1
IL_8GLP_2001/S2/123:124,
1/S2/339:341		Minor groove platform
geometric
IL_4V88_412
NA
IL_8GLP_3231/S2/145:151,
1/S2/167:174		No text annotation
homologous
IL_8C3A_402
NA
IL_8GLP_3241/S2/152:154,
1/S2/164:166		No text annotation
homologous
IL_8P9A_384
IL_44465.1
IL_8GLP_2041/S2/188:192,
1/S2/207:211		Triple sheared
geometric
IL_5J7L_274
IL_17948.2
IL_8GLP_2051/S2/216:219,
1/S2/302:309		No text annotation
IL_8GLP_2071/S2/312:314,
1/S2/336:337		Single bulged A
homologous
IL_4V88_399
NA
IL_8GLP_2081/S2/317:320,
1/S2/331:333		No text annotation
homologous
IL_4V88_400
NA
IL_8GLP_2091/S2/322:323,
1/S2/327:329		Single bulged U
geometric
IL_4V9F_029
IL_89505.4
IL_8GLP_2101/S2/359:364,
1/S2/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_8GLP_2111/S2/366:371,
1/S2/393:394		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_8GLP_2121/S2/411:413,
1/S2/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_8GLP_2131/S2/437:439,
1/S2/454:456		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_8GLP_3251/S2/459:461,
1/S2/468:470		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_8GLP_3261/S2/487:489,
1/S2/511:512		Single bulged U
homologous
IL_8P9A_396
IL_89505.4
IL_8GLP_3271/S2/491:495,
1/S2/508:509		C-loop
homologous
IL_8C3A_416
NA
IL_8GLP_2151/S2/495:496,
1/S2/506:508		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_8GLP_2161/S2/530:531,
1/S2/553:555		Single bulged A
homologous
IL_4V88_409
NA
IL_8GLP_2171/S2/535:537,
1/S2/547:549		Isolated non-canonical cWW pair
geometric
IL_1KFO_003
NA
IL_8GLP_3281/S2/535:538,
1/S2/545:549		No text annotation
IL_8GLP_2181/S2/537:538,
1/S2/545:547		Minor groove platform
geometric
IL_5ML7_009
IL_51454.2
IL_8GLP_2191/S2/563:565,
1/S2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_8GLP_2201/S2/566:569,
1/S2/581:584		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_8GLP_2211/S2/599:606,
1/S2/636:637		SSU/LSU pseudoknot
homologous
IL_4V88_413
NA
IL_8GLP_2221/S2/606:608,
1/S2/635:636		Single bulged U
geometric
IL_4V88_407
NA
IL_8GLP_2241/S2/611:617,
1/S2/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_8GLP_2251/S2/663:665,
1/S2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_8GLP_2261/S2/665:671,
1/S2/1161:1162		No text annotation
geometric
IL_4LFB_022
IL_38186.6
IL_8GLP_2271/S2/673:675,
1/S2/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_8GLP_2281/S2/676:680,
1/S2/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_8GLP_3291/S2/802:803,
1/S2/860:863		No text annotation
homologous
IL_8P9A_412
IL_68140.4
IL_8GLP_2311/S2/805:807,
1/S2/856:858		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_8GLP_3301/S2/807:815,
1/S2/849:856		No text annotation
homologous
IL_8C3A_503
NA
IL_8GLP_2331/S2/874:876,
1/S2/910:912		Isolated non-canonical cWW pair
geometric
IL_1YZ9_002
IL_87907.2
IL_8GLP_2341/S2/877:879,
1/S2/907:909		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8GLP_2351/S2/922:923,
1/S2/1019:1022		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_8GLP_2361/S2/925:927,
1/S2/1014:1017		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_8GLP_2371/S2/928:931,
1/S2/1010:1013		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_8GLP_2381/S2/931:935,
1/S2/1007:1010		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_8GLP_2391/S2/942:945,
1/S2/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_8GLP_2401/S2/952:956,
1/S2/967:974		Kink-turn
homologous
IL_4V88_434
NA
IL_8GLP_2411/S2/1042:1047,
1/S2/1071:1073		Other IL
homologous
IL_4V88_435
NA
IL_8GLP_2421/S2/1047:1051,
1/S2/1067:1071		tSH-tHW-tHS
geometric
IL_5J7L_037
IL_17136.7
IL_8GLP_2431/S2/1091:1093,
1/S2/1152:1158		No text annotation
homologous
IL_4V88_437
NA
IL_8GLP_2441/S2/1098:1101,
1/S2/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_8GLP_2451/S2/1101:1103,
1/S2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_8GLP_2461/S2/1108:1110,
1/S2/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_8GLP_2471/S2/1168:1175,
1/S2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_8GLP_2491/S2/1203:1204,
1/S2/1694:1696		Single bulged A
homologous
IL_4V88_441
NA
IL_8GLP_3311/S2/1206:1208,
1/S2/1691:1692		Single bulged G
homologous
IL_8C3A_448
NA
IL_8GLP_2511/S2/1214:1217,
1/S2/1681:1685		C-loop
homologous
IL_4V88_443
NA
IL_8GLP_3321/S2/1230:1232,
1/S2/1526:1528		Isolated non-canonical cWW pair
homologous
IL_8P9A_432
IL_87907.2
IL_8GLP_2541/S2/1235:1236,
1/S2/1521:1523		Minor groove platform
homologous
IL_4V88_445
NA
IL_8GLP_2551/S2/1270:1272,
1/S2/1510:1512		Isolated non-canonical cWW pair
geometric
IL_5MWI_006
NA
IL_8GLP_3411/S2/1282:1290,
1/S2/1309:1315		No text annotation
IL_8GLP_2571/S2/1291:1293,
1/S2/1306:1308		No text annotation
homologous
IL_4V88_448
NA
IL_8GLP_3331/S2/1325:1327,
1/S2/1502:1503		Single bulged U
homologous
IL_8C3A_455
NA
IL_8GLP_2591/S2/1329:1333,
1/S2/1498:1500		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_8GLP_3341/S2/1329:1335,
1/S2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_8GLP_2601/S2/1333:1335,
1/S2/1492:1498		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_8GLP_3351/S2/1337:1338,
1/S2/1488:1490		Single bulged A
homologous
IL_8C3A_458
NA
IL_8GLP_3361/S2/1347:1349,
1/S2/1380:1382		Isolated cWH basepair
homologous
IL_8P9A_442
IL_10167.5
IL_8GLP_2631/S2/1363:1365,
1/S2/1374:1375		Minor groove platform
homologous
IL_4V88_454
NA
IL_8GLP_3371/S2/1395:1399,
1/S2/1447:1450		No text annotation
geometric
IL_8C3A_403
NA
IL_8GLP_2661/S2/1402:1405,
1/S2/1441:1444		Minor groove platform
geometric
IL_4V88_456
NA
IL_8GLP_2671/S2/1408:1409,
1/S2/1432:1438		Multiple bulged bases
geometric
IL_1R3E_002
IL_84476.1
IL_8GLP_2681/S2/1412:1413,
1/S2/1427:1429		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_8GLP_2691/S2/1416:1417,
1/S2/1422:1424		Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_8GLP_2701/S2/1537:1539,
1/S2/1594:1596		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_87907.2
IL_8GLP_3381/S2/1541:1550,
1/S2/1582:1592		No text annotation
IL_8GLP_2711/S2/1550:1558,
1/S2/1577:1582		180 degree turn
geometric
IL_5J7L_055
IL_11344.2
IL_8GLP_2721/S2/1560:1562,
1/S2/1573:1575		Isolated non-canonical cWW pair
geometric
IL_5AOX_001
IL_87907.2
IL_8GLP_2731/S2/1604:1610,
1/S2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_8GLP_2741/S2/1700:1702,
1/S2/1833:1836		No text annotation
homologous
IL_4V88_463
NA
IL_8GLP_2751/S2/1702:1705,
1/S2/1829:1833		No text annotation
homologous
IL_8P9A_453
IL_65718.4
IL_8GLP_2761/S2/1706:1708,
1/S2/1826:1828		Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_8GLP_2771/S2/1708:1711,
1/S2/1822:1826		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_8GLP_2781/S2/1714:1716,
1/S2/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_8GLP_2791/S2/1717:1720,
1/S2/1813:1816		Double sheared
homologous
IL_4V88_468
NA
IL_8GLP_2801/S2/1720:1722,
1/S2/1812:1813		Single bulged U
geometric
IL_4V88_469
NA
IL_8GLP_2811/S2/1729:1731,
1/S2/1803:1805		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_8GLP_2821/S2/1733:1736,
1/S2/1798:1801		Double sheared
homologous
IL_4V88_471
NA
IL_8GLP_2831/S2/1739:1741,
1/S2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_1UN6_005
IL_87907.2
IL_8GLP_2841/S2/1742:1746,
1/S2/1788:1792		Triple sheared
homologous
IL_4V88_474
NA
IL_8GLP_3391/S2/1750:1753,
1/S2/1780:1784		No text annotation
IL_8GLP_3401/S2/1753:1754,
1/S2/1778:1780		Single stack bend
geometric
IL_8C3A_091
NA

Problematic loops

#loop idProblemSequence
IL_8GLP_011Isolated cWH basepair
IL_8GLP_020Isolated non-canonical cWW pair
IL_8GLP_031Single bulged C
IL_8GLP_042No text annotation
IL_8GLP_046Isolated non-canonical cWW pair
IL_8GLP_056No text annotation
IL_8GLP_065No text annotation
IL_8GLP_067No text annotation
IL_8GLP_068No text annotation
IL_8GLP_069No text annotation
IL_8GLP_296No text annotation
IL_8GLP_073Tandem non-canonical cWW pairs
IL_8GLP_298No text annotation
IL_8GLP_074Tandem non-canonical cWW pairs
IL_8GLP_299No text annotation
IL_8GLP_088Tandem non-canonical cWW pairs
IL_8GLP_090No text annotation
IL_8GLP_093Isolated cWS basepair
IL_8GLP_094Self complementary
IL_8GLP_103No text annotation
IL_8GLP_104Stack and bulge
IL_8GLP_105No text annotation
IL_8GLP_106Major groove platform with extra pair
IL_8GLP_111Isolated non-canonical cWW pair
IL_8GLP_112Isolated non-canonical cWW pair
IL_8GLP_115Stack and bulge
IL_8GLP_118No text annotation
IL_8GLP_121No text annotation
IL_8GLP_122Not an internal loop
IL_8GLP_123Not an internal loop
IL_8GLP_125No text annotation
IL_8GLP_126Stack and bulge
IL_8GLP_128Isolated non-canonical cWW pair
IL_8GLP_132Isolated non-canonical cWW pair
IL_8GLP_134Tandem non-canonical cWW pairs
IL_8GLP_139Decoding loop related
IL_8GLP_140No text annotation
IL_8GLP_142No text annotation
IL_8GLP_144Not an internal loop
IL_8GLP_147No text annotation
IL_8GLP_151Not an internal loop
IL_8GLP_153No text annotation
IL_8GLP_155Isolated non-canonical cWW pair
IL_8GLP_156Stack and bulge
IL_8GLP_160No text annotation
IL_8GLP_161No text annotation
IL_8GLP_177Stack and bulge
IL_8GLP_188Partly complementary
IL_8GLP_189Isolated non-canonical cWW pair
IL_8GLP_195Isolated non-canonical cWW pair
IL_8GLP_199No text annotation
IL_8GLP_201No text annotation
IL_8GLP_202No text annotation
IL_8GLP_203Tandem non-canonical cWW pairs
IL_8GLP_206No text annotation
IL_8GLP_214No text annotation
IL_8GLP_223Not an internal loop
IL_8GLP_229Stack and bulge
IL_8GLP_230No text annotation
IL_8GLP_232No text annotation
IL_8GLP_248Stack and bulge
IL_8GLP_250Intercalated cWW
IL_8GLP_252Isolated cWS basepair
IL_8GLP_253Tandem non-canonical cWW pairs
IL_8GLP_256No text annotation
IL_8GLP_258Isolated non-canonical cWW pair
IL_8GLP_261Isolated non-canonical cWW pair
IL_8GLP_262No text annotation
IL_8GLP_264Other IL
IL_8GLP_265Isolated non-canonical cWW pair
IL_8GLP_285No text annotation
IL_8GLP_286Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8GLP_0011/L5/112:116,
1/L5/155:160,
1/L5/275:278		No text annotation
J3_8GLP_0231/L5/196:199,
1/L5/215:228,
1/L5/240:244		No text annotation
J3_8GLP_0241/L5/351:367,
1/L5/374:379,
1/L8/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_8GLP_0251/L5/380:387,
1/L5/414:415,
1/L8/19:20		No text annotation
geometric
J3_5TBW_002
NA
J3_8GLP_0261/L5/380:390,
1/L5/401:415,
1/L8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8GLP_0271/L5/451:455,
1/L5/701:705,
1/L5/1292:1296		No text annotation
J3_8GLP_0281/L5/712:713,
1/L5/955:976,
1/L5/1278:1284		No text annotation
J3_8GLP_0021/L5/1531:1537,
1/L5/1622:1624,
1/L5/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_8GLP_0031/L5/1546:1548,
1/L5/1580:1584,
1/L5/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_8GLP_0291/L5/1726:1727,
1/L5/1802:1806,
1/L5/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_8GLP_0041/L5/2393:2399,
1/L5/2805:2807,
1/L5/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_8GLP_0051/L5/2402:2405,
1/L5/2785:2791,
1/L5/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_8GLP_0301/L5/2440:2445,
1/L5/2515:2519,
1/L5/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_8GLP_0311/L5/2451:2456,
1/L5/2465:2476,
1/L5/2501:2508		No text annotation
J3_8GLP_0061/L5/2551:2555,
1/L5/2572:2575,
1/L5/2757:2767		No text annotation
J3_8GLP_0321/L5/2575:2576,
1/L5/2585:2589,
1/L5/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_8GLP_0331/L5/2598:2602,
1/L5/2737:2738,
1/L5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_8GLP_0071/L5/3937:3939,
1/L5/4074:4078,
1/L5/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_8GLP_0081/L5/4091:4094,
1/L5/4114:4129,
1/L5/4155:4158		No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_8GLP_0341/L5/4228:4230,
1/L5/4331:4342,
1/L5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_8GLP_0091/L5/4241:4243,
1/L5/4267:4269,
1/L5/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_8GLP_0351/L5/4463:4466,
1/L5/4491:4493,
1/L5/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_8GLP_0361/L5/4751:4754,
1/L5/4879:4883,
1/L5/4936:4948		No text annotation
J3_8GLP_0371/L5/4970:4972,
1/L5/4986:4991,
1/L5/5060:5063		No text annotation
J3_8GLP_0381/L7/9:14,
1/L7/65:66,
1/L7/109:110		No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_8GLP_0391/L8/44:45,
1/L8/58:64,
1/L8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_8GLP_0401/S2/40:41,
1/S2/481:487,
1/S2/512:514		No text annotation
geometric
J3_4V88_078
NA
J3_8GLP_0411/S2/40:47,
1/S2/479:487,
1/S2/512:514		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_8GLP_0421/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_8GLP_0431/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_8GLP_0131/S2/816:819,
1/S2/829:831,
1/S2/843:848		No text annotation
homologous
J3_4V88_032
NA
J3_8GLP_0441/S2/938:941,
1/S2/985:993,
1/S2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_8GLP_0451/S2/1094:1096,
1/S2/1136:1140,
1/S2/1147:1151		No text annotation
J3_8GLP_0161/S2/1218:1221,
1/S2/1645:1651,
1/S2/1673:1680		No text annotation
homologous
J3_4V88_035
NA
J3_8GLP_0171/S2/1225:1228,
1/S2/1530:1532,
1/S2/1638:1641		No text annotation
homologous
J3_4V88_036
NA
J3_8GLP_0461/S2/1237:1244,
1/S2/1255:1266,
1/S2/1516:1520		No text annotation
homologous
J3_8C3A_040
NA
J3_8GLP_0191/S2/1272:1277,
1/S2/1320:1324,
1/S2/1504:1510		No text annotation
homologous
J3_4V88_038
NA
J3_8GLP_0201/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_8GLP_0471/S2/1350:1351,
1/S2/1360:1363,
1/S2/1375:1379		No text annotation
homologous
J3_8P9A_081
J3_76043.3
J3_8GLP_0481/S2/1391:1395,
1/S2/1450:1456,
1/S2/1470:1479		No text annotation
J3_8GLP_0221/S2/1532:1536,
1/S2/1597:1604,
1/S2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_8GLP_0011/L5/111:112,
1/L5/278:283,
1/L5/304:310,
1/L5/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_8GLP_0021/L5/196:199,
1/L5/215:222,
1/L5/226:228,
1/L5/240:244		No text annotation
J4_8GLP_0031/L5/981:983,
1/L5/1070:1072,
1/L5/1240:1243,
1/L5/1268:1273		No text annotation
J4_8GLP_0041/L5/2365:2371,
1/L5/2389:2391,
1/L5/2824:2829,
1/L5/3856:3857		No text annotation
J4_8GLP_0051/L5/2406:2410,
1/L5/2434:2439,
1/L5/2538:2539,
1/L5/2777:2784		No text annotation
J4_8GLP_0061/L5/2409:2410,
1/L5/2434:2439,
1/L5/2538:2539,
1/L5/2777:2783		No text annotation
J4_8GLP_0071/L5/2451:2456,
1/L5/2465:2469,
1/L5/2471:2476,
1/L5/2501:2508		No text annotation
J4_8GLP_0081/L5/2618:2619,
1/L5/2637:2642,
1/L5/2692:2698,
1/L5/2718:2719		No text annotation
J4_8GLP_0091/L5/3634:3638,
1/L5/3650:3654,
1/L5/3690:3694,
1/L5/3821:3826		No text annotation
homologous
J4_8C3A_006
NA
J4_8GLP_0101/L5/3696:3698,
1/L5/3752:3753,
1/L5/3771:3780,
1/L5/3814:3819		No text annotation
homologous
J4_8C3A_007
NA
J4_8GLP_0111/L5/4231:4235,
1/L5/4289:4291,
1/L5/4318:4319,
1/L5/4328:4330		No text annotation
J4_8GLP_0121/L5/4231:4235,
1/L5/4289:4293,
1/L5/4317:4319,
1/L5/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_8GLP_0131/L5/4587:4590,
1/L5/4620:4621,
1/L5/4676:4678,
1/L5/4712:4715		No text annotation
J4_8GLP_0141/Pt/7:10,
1/Pt/26:28,
1/Pt/44:50,
1/Pt/66:67		No text annotation
homologous
J4_7VNV_001
J4_70449.27
J4_8GLP_0151/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_8GLP_0161/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_8GLP_0011/L5/19:21,
1/L8/35:42,
1/L8/101:106,
1/L8/113:114,
1/L8/136:138		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_8GLP_0021/L5/1335:1340,
1/L5/1516:1519,
1/L5/1658:1661,
1/L5/2288:2290,
1/L5/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_8GLP_0031/L5/2855:2863,
1/L5/2887:2888,
1/L5/3613:3614,
1/L5/3618:3626,
1/L5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_8GLP_0041/L5/3903:3910,
1/L5/4392:4400,
1/L5/4444:4453,
1/L5/4528:4534,
1/L5/4552:4557		No text annotation
J5_8GLP_0051/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4228,
1/L5/4375:4381		No text annotation
homologous
J5_8C3A_006
NA
J5_8GLP_0061/S2/30:34,
1/S2/521:527,
1/S2/558:563,
1/S2/592:595,
1/S2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_8GLP_0071/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:595,
1/S2/641:644		No text annotation
J5_8GLP_0081/S2/53:56,
1/S2/89:96,
1/S2/434:436,
1/S2/457:459,
1/S2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_8GLP_0101/S2/125:129,
1/S2/183:185,
1/S2/214:215,
1/S2/310:312,
1/S2/337:338		No text annotation
J6_8GLP_0011/L5/21:26,
1/L5/57:67,
1/L5/74:78,
1/L5/105:109,
1/L5/332:339,
1/L8/33:35		No text annotation
J6_8GLP_0021/L5/1352:1355,
1/L5/1384:1388,
1/L5/1395:1399,
1/L5/1418:1421,
1/L5/1464:1466,
1/L5/1499:1504		No text annotation
J6_8GLP_0031/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4230,
1/L5/4331:4342,
1/L5/4370:4381		No text annotation
J7_8GLP_0011/L5/1666:1671,
1/L5/1684:1685,
1/L5/1852:1855,
1/L5/1879:1884,
1/L5/1895:1899,
1/L5/2077:2078,
1/L5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_8GLP_010No text annotation
J3_8GLP_011No text annotation
J3_8GLP_012No text annotation
J3_8GLP_014No text annotation
J3_8GLP_015No text annotation
J3_8GLP_018No text annotation
J3_8GLP_021No text annotation
J5_8GLP_009No text annotation

Coloring options:
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