Motif IL_15590.1 Version IL_15590.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-6 | 2-14 | 3-13 | 5-13 | 6-12 | 6-13 | 8-11 | 9-10 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.0000 | 1 | F1 | LSU rRNA | A | 1244 | U | 1245 | A | 1246 | C | 1247 | G | 1249 | A | 1250 | C | 1251 | A | 1252 | G | 1253 | * | C | 1310 | C | 1311 | G | 1312 | A | 1313 | A | 1314 | U | 1315 | cWW | ncSS | ncWW | tSS | tSH | ntHS | cWW | cWW | ||
| 2 | ➜ | 5AJ0 | 0.9842 | 1 | A2 | LSU rRNA | U | 1938 | A | 1939 | U | 1940 | G | 1942 | A | 1943 | C | 1944 | A | 1945 | G | 1946 | C | 1947 | * | G | 2002 | C | 2003 | C | 2004 | G | 2005 | A | 2006 | A | 2007 | cWW | ntSS | ntHS | ntHS | ncWS | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUAGACAGC*GCCGAA | 1 |
| AUACGGACAG*CCGAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAGACAG*CCGA | 1 |
| UACGGACA*CGAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-tSS-L-R-L-L-L-cWW-cWW
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: