IL_5AJ0_089

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

5AJ0|1|A2|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15590.1

Basepair signature

cWW-L-R-tSS-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|U|1938
5AJ0|1|A2|A|1939
5AJ0|1|A2|U|1940
5AJ0|1|A2|A|1941
5AJ0|1|A2|G|1942
5AJ0|1|A2|A|1943
5AJ0|1|A2|C|1944
5AJ0|1|A2|A|1945
5AJ0|1|A2|G|1946
5AJ0|1|A2|C|1947
*
5AJ0|1|A2|G|2002
5AJ0|1|A2|C|2003
5AJ0|1|A2|C|2004
5AJ0|1|A2|G|2005
5AJ0|1|A2|A|2006
5AJ0|1|A2|A|2007

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

60S acidic ribosomal protein P0

Chain AS

60S ribosomal protein L18a

Chain Am

Ubiquitin-60S ribosomal protein L40