Motif IL_24794.1 Version IL_24794.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-13 | 3-15 | 3-16 | 4-14 | 5-12 | 6-11 | 7-10 | 8-9 | 13-14 | 13-15 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5AJ0 | 0.2614 | A2 | LSU rRNA | C | 30 | U | 31 | G | 32 | A | 33 | A | 34 | U | 35 | U | 36 | U | 37 | * | A | 44 | U | 45 | U | 46 | A | 47 | G | 48 | U | 49 | C | 50 | A | 51 | G | 52 | cWW | tSH | ntHS | ntHW | tHH | cWW | cWW | ||||||
| 2 | ➜ | 4V8P | 0.0000 | F1 | LSU rRNA | C | 29 | U | 30 | G | 31 | A | 32 | A | 33 | C | 34 | U | 35 | U | 36 | * | A | 43 | U | 44 | C | 45 | A | 46 | G | 47 | U | 48 | A | 49 | A | 50 | G | 51 | cWW | ntSH | tSH | tHW | tHH | tHS | cWW | cWW | cSH | ||||
| 3 | ➜ | 3J7P | 0.1482 | 5 | LSU rRNA | C | 30 | U | 31 | G | 32 | A | 33 | A | 34 | U | 35 | U | 36 | U | 37 | * | A | 44 | U | 45 | U | 46 | A | 47 | G | 48 | U | 49 | C | 50 | A | 51 | G | 52 | cWW | ntSH | ncSW | tHW | tHH | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAUUU*AUUAGUCAG | 2 |
| CUGAACUU*AUCAGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAUU*UUAGUCA | 2 |
| UGAACU*UCAGUAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-R-L-tHW-cSH-tHH-L-R-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.15 | Max 0.27
Coloring options: