Motif IL_33985.1 Version IL_33985.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V88 | 0.0000 | 0 | A6 | SSU rRNA | G | 703 | C | 704 | U | 705 | A | 706 | A | 707 | C | 708 | * | G | 730 | C | 731 | G | 732 | A | 733 | A | 734 | C | 735 | cWW | cWW | ntSW | tHS | cWW | cWW | |
| 2 | ➜ | 4V8P | 0.7860 | 2 | F1 | LSU rRNA | G | 562 | G | 563 | U | 566 | C | 567 | A | 568 | C | 569 | * | G | 600 | A | 601 | A | 602 | A | 603 | A | 604 | C | 605 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUCAC*GAAAAC | 1 |
| GCUAAC*GCGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGUCA*AAAA | 1 |
| CUAA*CGAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-L-R-bif-cWW-cWW
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
Coloring options: