Motif IL_37847.1 Version IL_37847.1 of this group appears in releases 2.0 to 2.0
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-10 | 4-7 | 4-8 | 4-9 | 5-7 | 5-8 | 6-7 | 6-8 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ➜ | 4BTS | 0.2732 | 0 | DA | SSU rRNA | U | 113 | U | 114 | A | 115 | U | 116 | U | 117 | U | 118 | * | A | 286 | U | 287 | C | 288 | U | 289 | A | 290 | cWW | cWW | ntHS | cWW | cWW | ||||||
2 | ➜ | 4V88 | 0.1629 | 0 | A6 | SSU rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ncSW | ntHS | cWW | cWW | cWW | |||||
3 | ➜ | 5A2Q | 0.0000 | 0 | 2 | SSU rRNA | U | 116 | C | 117 | C | 118 | U | 119 | U | 120 | U | 121 | * | A | 343 | U | 344 | U | 345 | C | 346 | G | 347 | cWW | ntHS | cWW | cWW | cWW | ncWS | |||||
4 | ➜ | 3J7P | 0.1889 | 0 | S2 | SSU rRNA | U | 116 | C | 117 | C | 118 | U | 119 | U | 120 | U | 121 | * | A | 343 | U | 344 | U | 345 | C | 346 | G | 347 | cWW | ncWW | ncWW | cWW | |||||||
5 | ➜ | 4V8P | 0.9532 | 1 | F1 | LSU rRNA | G | 430 | A | 431 | G | 432 | A | 434 | A | 435 | U | 436 | * | A | 646 | U | 647 | G | 648 | G | 649 | C | 650 | cWW | cWW | ntSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCCUUU*AUUCG | 2 |
GAGCAAU*AUGGC | 1 |
UUAUUU*AUUCA | 1 |
UUAUUU*AUCUA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCUU*UUC | 2 |
AGCAA*UGG | 1 |
UAUU*UUC | 1 |
UAUU*UCU | 1 |
Release history
Release | 2.0 |
---|---|
Date | 2017-04-24 |
Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-L-cWW-cWW-cWW
- Heat map statistics
- Min 0.16 | Avg 0.42 | Max 0.95
Coloring options: