Motif IL_42537.1 Version IL_42537.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-5 | 1-6 | 2-4 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5AJ0 | 0.3701 | A2 | LSU rRNA | U | 4030 | G | 4031 | A | 4032 | * | U | 3921 | G | 3922 | A | 3923 | ncSW | cWW | cWW | ||||
| 2 | ➜ | 3J79 | 0.2310 | A | LSU rRNA | G | 914 | G | 915 | U | 916 | * | A | 743 | G | 744 | C | 745 | cWW | cWW | |||||
| 3 | ➜ | 4J39 | 0.0000 | CC cWW | B | RNA (19-mer) | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | * | G | 9 | C | 10 | C | 11 | cWW | ncWW | cWW | |||
| 4 | ➜ | 4V88 | 0.2585 | A6 | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |||||
| 5 | ➜ | 3J7R | 0.5674 | S6 | tRNA | C | 12 | C | 13 | C | 14 | * | G | 22 | A | 23 | G | 24 | cWW | ncWW | cWW | ||||
| 6 | ➜ | 3J7A | 0.6789 | A | SSU rRNA | C | 417 | A | 418 | U | 419 | * | A | 426 | A | 427 | G | 428 | cWW | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCC*GAG | 1 |
| CAU*AAG | 1 |
| UGU*AGA | 1 |
| GCC*GCC | 1 |
| GGU*AGC | 1 |
| UGA*UGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 3 |
| A*A | 1 |
| C*C | 1 |
| C*A | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- CC cWW (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.23 | Avg 0.43 | Max 0.77
Coloring options: