IL_44927.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_3SN2_002➜	3SN2	0.1612	1	Single bulged C	B	transferrin receptor iron regulatory element B RNA	G	13	C	14	*	G	18	C	20	cWW	cWW
2	IL_5F9R_003➜	5F9R	0.2137	1	Single bulged U	A	RNA (116-MER)	G	72	C	73	*	G	76	C	78	cWW	cWW
3	IL_5FW3_002➜	5FW3	0.2186	1		A	SGRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
4	IL_4OO8_005➜	4OO8	0.2251	1		E	RNA (97-MER)	G	54	C	55	*	G	58	C	60	cWW	cWW
5	IL_4ZT0_004➜	4ZT0	0.2171	1	Single bulged U	D	single-guide RNA	G	54	C	55	*	G	58	C	60	cWW	cWW
6	IL_4V19_013➜	4V19	0.1553	1		A	LSU rRNA	G	264	C	265	*	G	309	C	311	cWW	cWW
7	IL_4V9F_025➜	4V9F	0.0000	1	Single bulged A	0	LSU rRNA	A	788	C	789	*	G	856	U	858	cWW	cWW
8	IL_3J7Y_013➜	3J7Y	0.1803	1		A	LSU rRNA	A	1929	C	1930	*	G	1973	U	1975	cWW	cWW
9	IL_3J9W_024➜	3J9W	0.2378	1		AA	SSU rRNA	G	613	U	614	*	G	641	C	643	cWW	cWW
10	IL_4V88_272➜	4V88	0.2764	1		A5	LSU rRNA	G	859	C	861	*	G	833	U	834	cWW	cWW
11	IL_4V91_033➜	4V91	0.2519	1		1	LSU rRNA	G	859	C	861	*	G	833	U	834	cWW	cWW
12	IL_3J7P_104➜	3J7P	0.3408	2		5	LSU rRNA	G	3811	U	3814	*	G	3780	C	3781	cWW	cWW
13	IL_3J79_086➜	3J79	0.2565	2		A	LSU rRNA	G	2600	U	2603	*	G	2569	C	2570	cWW	cWW
14	IL_3J9W_144➜	3J9W	0.3175	2		BA	LSU rRNA	G	1993	C	1996	*	G	1962	C	1963	cWW	cWW
15	IL_5J7L_318➜	5J7L	0.3105	2	Multiple bulged bases	DA	LSU rRNA	G	1964	C	1967	*	G	1933	C	1934	cWW	cWW
16	IL_4IOA_071➜	4IOA	0.3570	2		X	LSU rRNA	G	1947	C	1950	*	G	1916	C	1917	cWW	cWW
17	IL_397D_001➜	397D	0.5420	3	Multiple bulged bases	B+A	RNA (12-mer)	C	39	U	40	*	A	22	G	26	cWW	cWW
18	IL_1MJI_001➜	1MJI	0.6653	2		C	5S rRNA fragment	G	51	G	54	*	C	30	C	31	cWW	cWW
19	IL_5AJ0_153➜	5AJ0	0.6230	2		A2	LSU rRNA	C	4420	U	4421	*	A	4479	G	4482	cWW	cWW
20	IL_5FDU_100➜	5FDU	0.7952	2		1A	LSU rRNA	C	2524	G	2525	*	C	2583	G	2586	cWW	cWW
21	IL_5J7L_341➜	5J7L	0.9052	2		DA	LSU rRNA	C	2512	A	2513	*	U	2571	G	2574	cWW	cWW
22	IL_3J7Y_054➜	3J7Y	0.8685	2		A	LSU rRNA	C	2999	A	3000	*	U	3058	G	3061	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GC*GUC	4
GCAC*GC	3
CA*UACG	2
GGC*GU	2
GCAU*GC	2
AC*GAU	2
CG*CACG	1
GC*GAC	1
CU*AACG	1
CU*AUCUG	1
GC*GCC	1
GU*GUC	1
GAAG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CA*	5
*U	5
*AC	4
*A	3
G*	2
*C	1
AA*	1
*UCU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_44927.1 Version IL_44927.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_44927.1 Version IL_44927.1 of this group appears in releases 2.0 to 2.0

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Csv

Json