Motif IL_46759.1 Version IL_46759.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V9F | 0.2557 | Triple sheared related | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | tSH | tHS | cWW | ||
| 2 | ➜ | 3J9W | 0.0000 | AA | SSU rRNA | C | 1439 | C | 1440 | G | 1441 | A | 1442 | A | 1443 | G | 1444 | * | C | 1476 | G | 1477 | A | 1478 | A | 1479 | G | 1480 | cWW | tSH | ntHS | cWW | |||
| 3 | ➜ | 4V4Q | 0.2408 | CA | SSU rRNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | tHS | cWW | ||
| 4 | ➜ | 4V8P | 0.3321 | F1 | LSU rRNA | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | * | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | cWW | tSH | tSH | ntHW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGCAG*CCAAG | 1 |
| AAGAAG*CCACU | 1 |
| CCGAAG*CGAAG | 1 |
| ACGAAU*AGACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCA*CAA | 1 |
| AGAA*CAC | 1 |
| CGAA*GAA | 1 |
| CGAA*GAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared related (1)
- Basepair signature
- cWW-tSH-tSH-L-tHS-cWW
- Heat map statistics
- Min 0.24 | Avg 0.23 | Max 0.40
Coloring options: