Motif IL_64585.1 Version IL_64585.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V91 | 0.6765 | 1 | 1 | LSU rRNA | G | 2206 | A | 2207 | A | 2208 | G | 2210 | * | C | 2235 | G | 2236 | C | 2237 | cWW | cSH | cWW | ||||
| 2 | ➜ | 4V88 | 0.5108 | 1 | A5 | LSU rRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | cWW | ncWW | cSH | cWW | |||
| 3 | ➜ | 3J7Y | 0.3453 | 0 | A | LSU rRNA | G | 2712 | C | 2713 | A | 2714 | A | 2715 | * | U | 3104 | A | 3105 | C | 3106 | cWW | ncWW | cSH | tSH | cWW | ||
| 4 | ➜ | 3V7E | 0.1114 | 0 | Major groove platform with extra pair | C | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 88 | U | 89 | G | 90 | cWW | tSH | cSH | cWW | ||
| 5 | ➜ | 4L81 | 0.0777 | 0 | A | SAM-I/IV variant riboswitch aptamer domain | C | 24 | A | 25 | A | 26 | C | 27 | * | G | 46 | U | 47 | G | 48 | cWW | tSH | cSH | cWW | |||
| 6 | ➜ | 3GX5 | 0.0000 | 0 | A | RNA (94-MER) | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | |||
| 7 | ➜ | 5FJC | 0.0735 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | ||
| 8 | ➜ | 4AOB | 0.0943 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cWW | |||
| 9 | ➜ | 4AOB | 0.0943 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44||||7_555 | A | 45||||7_555 | A | 46||||7_555 | C | 47||||7_555 | * | G | 56||||7_555 | U | 57||||7_555 | G | 58||||7_555 | cWW | tSH | cWW | |||
| 10 | ➜ | 4KQY | 0.1591 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | tSH | cSH | cWW | ||
| 11 | ➜ | 4KQY | 0.1591 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45||||4_555 | A | 46||||4_555 | A | 47||||4_555 | C | 48||||4_555 | * | G | 77||||4_555 | U | 78||||4_555 | G | 79||||4_555 | cWW | tSH | cSH | cWW | ||
| 12 | ➜ | 3J7P | 0.5752 | 0 | S2 | SSU rRNA | C | 317 | A | 318 | C | 319 | G | 320 | * | C | 331 | G | 332 | G | 333 | cWW | ncSW | cWW | ||||
| 13 | ➜ | 4V88 | 0.4833 | 0 | A5 | LSU rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | cSW | cWW | ||||
| 14 | ➜ | 5AJ0 | 0.6010 | 0 | A2 | LSU rRNA | U | 486 | G | 487 | U | 488 | C | 489 | * | G | 653 | G | 654 | A | 655 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 8 |
| GAUA*UGC | 1 |
| UGUC*GGA | 1 |
| CACG*CGG | 1 |
| GAAUG*CGC | 1 |
| GCAA*UAC | 1 |
| GAGUG*UUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 8 |
| AU*G | 1 |
| GU*G | 1 |
| AC*G | 1 |
| AAU*G | 1 |
| CA*A | 1 |
| AGU*U | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra pair (6)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 0.84
Coloring options: