Motif IL_75831.1 Version IL_75831.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5G2X | 0.3510 | 2 | A | Group II catalytic intron | U | 2405 | A | 2406 | * | U | 2419 | G | 2422 | cWW | cWW | |
| 2 | ➜ | 4V88 | 0.2240 | 1 | Single bulged U | A6 | SSU rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
| 3 | ➜ | 5AJ0 | 0.0000 | 1 | A2 | LSU rRNA | C | 2043 | G | 2044 | * | C | 1901 | G | 1903 | cWW | cWW | |
| 4 | ➜ | 5LJ3 | 0.1638 | 2 | V+Z | U6 snRNA + U2 snRNA | C | 58 | A | 59 | * | U | 23 | G | 26 | cWW | cWW | |
| 5 | ➜ | 3J9W | 0.4168 | 2 | BA | LSU rRNA | C | 2541 | A | 2542 | * | U | 2600 | G | 2603 | cWW | cWW | |
| 6 | ➜ | 4V19 | 0.4731 | 2 | A | LSU rRNA | C | 1333 | A | 1334 | * | U | 1392 | G | 1395 | cWW | cWW | |
| 7 | ➜ | 4IOA | 0.5209 | 3 | X | LSU rRNA | C | 2674 | U | 2675 | * | A | 2690 | G | 2694 | cWW | cWW | |
| 8 | ➜ | 3JB9 | 0.6205 | 6 | C | U5 snRNA | G | 66 | U | 67 | * | A | 25 | C | 32 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UACG | 2 |
| CU*ACAUG | 1 |
| GU*AAGCUAAC | 1 |
| CA*UUAG | 1 |
| UA*UUG | 1 |
| CG*CCG | 1 |
| UA*UACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AC | 3 |
| *AGCUAA | 1 |
| *CAU | 1 |
| *C | 1 |
| *U | 1 |
| *UA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged U (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.14 | Avg 0.42 | Max 0.73
Coloring options: