Motif IL_85920.1 Version IL_85920.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-3 | 2-8 | 3-5 | 3-6 | 3-7 | 4-8 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J7Y | 0.9203 | 0 | A | LSU rRNA | U | 2456 | A | 2457 | A | 2458 | A | 2459 | A | 2460 | A | 2461 | * | U | 2666 | U | 2667 | A | 2668 | cWW | tSH | ntHS | cWW | ||||||
| 2 | ➜ | 4V88 | 0.0000 | 1 | A5 | LSU rRNA | G | 1500 | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | C | 1516 | cWW | ncSH | ncSW | cSH | ntSW | tWH | cWS | cWW | ||
| 3 | ➜ | 3J79 | 0.1480 | 1 | A | LSU rRNA | G | 1649 | U | 1650 | C | 1651 | A | 1652 | A | 1653 | C | 1654 | * | G | 1662 | A | 1664 | C | 1665 | cWW | ntSH | cSH | ntSW | tWH | ntHS | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAAC*GAAC | 1 |
| GUCAAC*GGAC | 1 |
| UAAAAA*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAA*AA | 1 |
| UCAA*GA | 1 |
| AAAA*U | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-tWH-cSH-L-cWS-cWW
- Heat map statistics
- Min 0.15 | Avg 0.45 | Max 0.95
Coloring options: