IL_96706.1

#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More

#D	#S	Loop id	PDB	Disc	Bulges		1		2	break		3		4		5	1-3	1-4	1-5	2-3	2-4	3-5	4-5
1	42	IL_5FDU_094➜	5FDU	0.0000	0	G	2466	G	2467	*	C	2508	A	2509	C	2510			cWW	cWW			cSH
2	41	IL_4IOA_086➜	4IOA	0.0824	0	G	2433	G	2434	*	C	2475	A	2476	C	2477			cWW	cWW			ncSH
3	43	IL_4V9F_082➜	4V9F	0.1129	0	G	2489	A	2490	*	U	2531	A	2532	C	2533			cWW	cWW			cSH
4	38	IL_1S03_004➜	1S03	0.1513	0	U	16	G	17	*	C	34	A	35	A	36		tHS	cWW	cWW			cSH
5	40	IL_4L81_002➜	4L81	0.1529	0	U	29	G	30	*	C	42	A	43	A	44			cWW	cWW			cSH
6	44	IL_3J9W_161➜	3J9W	0.1593	0	G	2483	G	2484	*	C	2525	A	2526	C	2527			cWW	cWW			cSH
7	39	IL_1S03_008➜	1S03	0.1619	0	U	16	G	17	*	C	34	A	35	A	36		tHS	cWW	cWW			cSH
8	47	IL_3OX0_003➜	3OX0	0.1684	0	G	35	G	36	*	C	68	U	69	C	70			cWW	cWW			cSH
9	45	IL_3D0U_004➜	3D0U	0.1873	1	G	51	G	52	*	C	35	A	36	C	38			cWW	cWW			cSH
10	20	IL_4V19_036➜	4V19	0.2059	0	U	1438	A	1439	*	U	1043	A	1044	A	1045		tHS	cWW	cWW			cSH
11	21	IL_5J7L_320➜	5J7L	0.2063	0	U	2617	G	2618	*	C	2050	A	2051	A	2052		tHS	cWW	cWW			cSH
12	56	IL_5AJ0_146➜	5AJ0	0.2145	0	G	4362	G	4363	*	U	4404	C	4405	C	4406			cWW	cWW			cSH
13	53	IL_4IOA_084➜	4IOA	0.2230	0	G	2393	G	2394	*	U	2380	A	2381	C	2382			cWW	cWW
14	52	IL_1XJR_002➜	1XJR	0.2344	0	G	13	G	14	*	U	37	A	38	C	39			cWW	cWW			cSH
15	51	IL_5FDU_009➜	5FDU	0.2378	0	G	291	G	292	*	U	392	A	393	C	394			cWW	cWW
16	46	IL_3JCS_101➜	3JCS	0.2388	0	G	1262	G	1263	*	U	1304	C	1305	C	1306			cWW	cWW		ncSH	cSH
17	12	IL_4V19_020➜	4V19	0.2452	1	U	543	C	544	*	G	529	A	531	A	532		ntHS	cWW	cWW			cSH
18	49	IL_1G1X_005➜	1G1X	0.2522	0	G	657	G	658	*	C	747	C	748	C	749			cWW	cWW			cSH
19	54	IL_5FDU_092➜	5FDU	0.2531	0	G	2426	G	2427	*	U	2413	C	2414	C	2415			cWW	cWW			cSH
20	55	IL_5AN9_035➜	5AN9	0.2553	0	G	3156	G	3157	*	U	3198	C	3199	C	3200			cWW	cWW		ncSH
21	57	IL_3J79_099➜	3J79	0.2580	0	G	3182	G	3183	*	U	3224	C	3225	C	3226			cWW	cWW		cSH
22	34	IL_4V4Q_208➜	4V4Q	0.2595	0	U	644	G	645	*	U	594	A	595	A	596			cWW	cWW			cSH
23	22	IL_5FDU_079➜	5FDU	0.2613	0	C	2629	G	2630	*	C	2072	A	2073	G	2074			cWW	cWW			cSH
24	23	IL_4IOA_073➜	4IOA	0.2616	0	C	2596	G	2597	*	C	2033	A	2034	G	2035			cWW	cWW			cSH
25	60	IL_4V8P_408➜	4V8P	0.2618	0	G	2811	G	2812	*	U	2853	C	2854	C	2855			cWW	cWW		ncSH	ncSH
26	35	IL_1I6U_001➜	1I6U	0.2647	0	U	28	G	29	*	U	9	A	10	A	11		tHS	cWW	cWW			cSH
27	50	IL_1G1X_002➜	1G1X	0.2693	0	G	657	G	658	*	C	747	C	748	C	749			cWW	cWW			cSH
28	33	IL_5FDU_095➜	5FDU	0.2697	0	U	2505	G	2506	*	U	2469	G	2470	A	2471		ntHS	cWW	cWW
29	64	IL_3NKB_002➜	3NKB	0.2712	0	U	47	C	48	*	G	55	U	56	A	57			cWW	cWW			cSH
30	13	IL_3J7Y_024➜	3J7Y	0.2738	1	U	2211	C	2212	*	G	2197	A	2199	A	2200		ntHS	cWW	cWW			cSH
31	58	IL_4V91_111➜	4V91	0.2745	0	G	2823	G	2824	*	U	2865	U	2866	C	2867			cWW	cWW		ncSH	ncSH
32	37	IL_4V9F_044➜	4V9F	0.2749	1	U	1205	U	1206	*	A	1191	A	1193	A	1194		tHS	cWW	cWW			cSH
33	59	IL_4V88_349➜	4V88	0.2785	0	G	2823	G	2824	*	U	2865	U	2866	C	2867			cWW	cWW		ncSH	ncSH
34	36	IL_3J9W_022➜	3J9W	0.2803	0	U	653	G	654	*	U	603	A	604	A	605		tHS	cWW	cWW			cSH
35	32	IL_4IOA_087➜	4IOA	0.2809	0	U	2472	G	2473	*	U	2436	G	2437	A	2438		ntHS	cWW	cWW
36	48	IL_1FJG_028➜	1FJG	0.2824	0	G	657	G	658	*	C	747	C	748	C	749			cWW	cWW			cSH
37	19	IL_5J7L_264➜	5J7L	0.2914	0	G	757	C	758	*	G	738	A	739	C	740			cWW	cWW			cSH
38	18	IL_3J9W_087➜	3J9W	0.3010	0	G	804	G	805	*	C	785	A	786	C	787			cWW	cWW			cSH
39	11	IL_1FJG_024➜	1FJG	0.3035	0	G	644	C	645	*	G	594	G	595	C	596		tHS	cWW	cWW			cSH
40	65	IL_4BTS_336➜	4BTS	0.3159	0	U	1469	C	1470	*	G	1479	U	1480	A	1481			cWW	cWW			ncSH
41	31	IL_4V8P_323➜	4V8P	0.3227	0	U	473	G	474	*	U	503	A	504	A	505			cWW	cWW	ncWS		ncSH
42	24	IL_3J9W_146➜	3J9W	0.3344	0	C	2646	G	2647	*	C	2079	A	2080	G	2081			cWW	cWW			cSH
43	15	IL_3DIR_004➜	3DIR	0.3376	1	G	54	G	55	*	C	38	A	39	C	41			cWW	cWW
44	25	IL_3P49_010➜	3P49	0.3416	0	G	113	G	114	*	C	140	U	141	C	142			cWW	cWW			cSH
45	61	IL_3J7P_118➜	3J7P	0.3489	0	G	4400	G	4401	*	U	4442	C	4443	C	4444	ncWW		ncWW	cWW			cSH
46	63	IL_4V19_045➜	4V19	0.3598	0	G	1275	C	1276	*	G	1317	A	1318	C	1319			cWW	cWW			ncSH
47	62	IL_3J7Y_047➜	3J7Y	0.3622	0	G	2941	C	2942	*	G	2983	A	2984	C	2985			cWW	cWW
48	14	IL_1QA6_004➜	1QA6	0.3869	1	U	151	C	152	*	G	137	A	139	A	140		tHS	cWW	cWW			cSH
49	16	IL_5AJ0_033➜	5AJ0	0.3981	0	C	649	C	650	*	G	491	C	492	G	493			cWW	cWW
50	17	IL_3P49_007➜	3P49	0.3989	0	G	38	A	39	*	U	49	U	50	C	51			cWW	cWW			cSH
51	7	IL_1FJG_027➜	1FJG	0.4035	1	G	654	A	655	*	U	751	G	752	C	754		tHS	cWW	cWW		ncSH	ncSH
52	8	IL_4V4Q_211➜	4V4Q	0.4087	1	G	654	A	655	*	U	751	G	752	C	754		tHS	cWW	cWW		ncSH	ncSH
53	5	IL_1G1X_001➜	1G1X	0.4203	1	G	654	A	655	*	U	751	G	752	C	754		tHS	cWW	cWW		ncSH	ncSH
54	6	IL_1G1X_004➜	1G1X	0.4205	1	G	654	A	655	*	U	751	G	752	C	754		tHS	cWW	cWW		ncSH	ncSH
55	9	IL_3J9W_026➜	3J9W	0.4404	1	G	663	A	664	*	U	760	G	761	C	763		ntHS	cWW	cWW
56	2	IL_5J7L_306➜	5J7L	0.4429	1	U	1993	C	1994	*	G	1666	G	1667	A	1669		tHS	cWW	cWW
57	26	IL_4V8P_410➜	4V8P	0.4573	0	U	2850	G	2851	*	U	2814	U	2815	G	2816		ncWW	cWW	cWW
58	10	IL_4QLM_004➜	4QLM	0.4577	1	G	39	G	40	*	C	91	G	92	C	94		tHS	cWW	cWW			ncSH
59	30	IL_3J7P_120➜	3J7P	0.4597	0	U	4439	G	4440	*	U	4403	U	4404	G	4405		ncWW	cWW	cWW
60	4	IL_4V19_028➜	4V19	0.4691	1	U	986	C	987	*	G	799	G	800	A	802		tHS	cWW	cWW
61	3	IL_3J79_075➜	3J79	0.4788	1	U	2629	C	2630	*	G	2166	G	2167	A	2169		tHS	cWW	cWW
62	27	IL_4V91_113➜	4V91	0.4849	0	U	2862	G	2863	*	U	2826	U	2827	G	2828		ncWW	cWW	cWW
63	28	IL_5AJ0_148➜	5AJ0	0.4853	0	U	4401	G	4402	*	U	4365	U	4366	G	4367		ncWW	cWW	cWW
64	66	IL_3Q1Q_001➜	3Q1Q	0.4886	0	G	328	C	329	*	G	51	U	52	C	53			cWW	cWW			ncSH
65	29	IL_3J79_101➜	3J79	0.4902	0	U	3221	G	3222	*	U	3185	U	3186	G	3187		ncWW	cWW	cWW
66	68	IL_3SUX_005➜	3SUX	0.5039	0	G	37^	A	38^	*	U	47^	G	48^	U	49^			cWW	ncWW			ncSH
67	67	IL_3SUX_002➜	3SUX	0.5039	0	G	37	A	38	*	U	47	G	48	U	49			cWW	ncWW			ncSH
68	1	IL_3J7P_094➜	3J7P	0.5075	1	U	3840	C	3841	*	G	2847	G	2848	A	2850		tHS	cWW	cWW
69	69	IL_4V8P_389➜	4V8P	0.5716	1	U	2195	G	2196	*	U	2236	A	2237	A	2239			cWW	cWW			ncSH
70	77	IL_3J9W_165➜	3J9W	0.6318	0	C	2536	G	2537	*	U	2609	G	2610	G	2611			cWW	cWW			ncHH
71	70	IL_5A2Q_092➜	5A2Q	0.6489	0	C	114	C	115	*	G	47	U	48	G	49			cWW	cWW
72	86	IL_3J9W_162➜	3J9W	0.6606	0	U	2522	G	2523	*	U	2486	U	2487	A	2488			cWW	cWW
73	84	IL_4IOA_090➜	4IOA	0.6615	0	C	2486	G	2487	*	U	2559	G	2560	G	2561			cWW	cWW			cHH
74	85	IL_3J79_066➜	3J79	0.6632	0	C	1823	A	1824	*	U	2001	G	2002	G	2003			cWW	cWW			cHH
75	73	IL_3J9W_132➜	3J9W	0.6647	1	U	2022	C	2023	*	G	1711	G	1712	A	1714			cWW	cWW
76	75	IL_3J7P_123➜	3J7P	0.6673	0	C	4453	G	4454	*	U	4526	G	4527	G	4528			cWW	ncWW
77	76	IL_5AN9_040➜	5AN9	0.6675	0	C	3209	G	3210	*	U	3282	G	3283	G	3284			cWW	cWW
78	83	IL_3JCS_103➜	3JCS	0.6683	0	C	1315	G	1316	*	U	1388	G	1389	G	1390			cWW	cWW			ncHH
79	78	IL_4V19_049➜	4V19	0.6717	0	U	1328	G	1329	*	U	1401	G	1402	A	1403			cWW	cWW		ncSH
80	80	IL_4V8P_413➜	4V8P	0.6721	0	C	2864	G	2865	*	U	2937	G	2938	G	2939			cWW	cWW
81	74	IL_3J7Y_052➜	3J7Y	0.6731	0	U	2994	G	2995	*	U	3067	G	3068	A	3069	ntHW		cWW	cWW		ncSH
82	79	IL_4V91_116➜	4V91	0.6736	0	C	2876	G	2877	*	U	2949	G	2950	G	2951			cWW	cWW
83	82	IL_5AJ0_151➜	5AJ0	0.6754	0	C	4415	G	4416	*	U	4488	G	4489	G	4490			cWW	cWW			cHH
84	81	IL_3J79_104➜	3J79	0.6816	0	C	3235	G	3236	*	U	3308	G	3309	G	3310			cWW	cWW
85	71	IL_3J9W_176➜	3J9W	0.7611	0	G	2863	G	2864	*	U	2903	A	2904	C	2905			cWW	cWW
86	72	IL_5J7L_352➜	5J7L	0.7711	0	G	2838	G	2839	*	U	2878	A	2879	C	2880			cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CG*UGG	9
GG*UCC	7
GG*UAC	5
UG*UUG	5
GA*UGAC	5
UC*GGAA	5
UG*UAA	4
GG*CAC	4
UG*UGA	4
UG*CAA	4
GC*GAC	3
CG*CAG	3
UC*GAAA	3
GG*CCC	3
GG*CUC	2
GA*UGU	2
UC*GUA	2
GG*UUC	2
GG*CAUC	2
CA*UGG	1
CC*GUG	1
GC*GUC	1
UG*UUA	1
UG*UAAA	1
UU*AAAA	1
UA*UAA	1
GA*UAC	1
GC*GGC	1
CC*GCG	1
GA*UUC	1
GG*CGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	25
*G	17
*U	15
*C	11
*GA	10
*AA	5
*AU	2
*GU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_96706.1 Release 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_96706.1 Release 2.0

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Csv

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