Motif IL_96706.1 Version IL_96706.1 of this group appears in releases 2.0 to 2.0
#D - ordering by discrepancy relative to the exemplar,
#S - ordering by similarity (same as in the heat map).
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#D | #S | Loop id | PDB | Disc | #Non-core | Annotation | 1 | 2 | break | 3 | 4 | 5 | 1-3 | 1-4 | 1-5 | 2-3 | 2-4 | 3-5 | 4-5 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
68 | 1 | ➜ | 3J7P | 0.5075 | 1 | U | 3840 | C | 3841 | * | G | 2847 | G | 2848 | A | 2850 | tHS | cWW | cWW | |||||
56 | 2 | ➜ | 5J7L | 0.4429 | 1 | U | 1993 | C | 1994 | * | G | 1666 | G | 1667 | A | 1669 | tHS | cWW | cWW | |||||
61 | 3 | ➜ | 3J79 | 0.4788 | 1 | U | 2629 | C | 2630 | * | G | 2166 | G | 2167 | A | 2169 | tHS | cWW | cWW | |||||
60 | 4 | ➜ | 4V19 | 0.4691 | 1 | U | 986 | C | 987 | * | G | 799 | G | 800 | A | 802 | tHS | cWW | cWW | |||||
53 | 5 | ➜ | 1G1X | 0.4203 | 1 | G | 654 | A | 655 | * | U | 751 | G | 752 | C | 754 | tHS | cWW | cWW | ncSH | ncSH | |||
54 | 6 | ➜ | 1G1X | 0.4205 | 1 | G | 654 | A | 655 | * | U | 751 | G | 752 | C | 754 | tHS | cWW | cWW | ncSH | ncSH | |||
51 | 7 | ➜ | 1FJG | 0.4035 | 1 | G | 654 | A | 655 | * | U | 751 | G | 752 | C | 754 | tHS | cWW | cWW | ncSH | ncSH | |||
52 | 8 | ➜ | 4V4Q | 0.4087 | 1 | G | 654 | A | 655 | * | U | 751 | G | 752 | C | 754 | tHS | cWW | cWW | ncSH | ncSH | |||
55 | 9 | ➜ | 3J9W | 0.4404 | 1 | G | 663 | A | 664 | * | U | 760 | G | 761 | C | 763 | ntHS | cWW | cWW | |||||
58 | 10 | ➜ | 4QLM | 0.4577 | 1 | G | 39 | G | 40 | * | C | 91 | G | 92 | C | 94 | tHS | cWW | cWW | ncSH | ||||
39 | 11 | ➜ | 1FJG | 0.3035 | 0 | G | 644 | C | 645 | * | G | 594 | G | 595 | C | 596 | tHS | cWW | cWW | cSH | ||||
17 | 12 | ➜ | 4V19 | 0.2452 | 1 | U | 543 | C | 544 | * | G | 529 | A | 531 | A | 532 | ntHS | cWW | cWW | cSH | ||||
30 | 13 | ➜ | 3J7Y | 0.2738 | 1 | U | 2211 | C | 2212 | * | G | 2197 | A | 2199 | A | 2200 | ntHS | cWW | cWW | cSH | ||||
48 | 14 | ➜ | 1QA6 | 0.3869 | 1 | U | 151 | C | 152 | * | G | 137 | A | 139 | A | 140 | tHS | cWW | cWW | cSH | ||||
43 | 15 | ➜ | 3DIR | 0.3376 | 1 | G | 54 | G | 55 | * | C | 38 | A | 39 | C | 41 | cWW | cWW | ||||||
49 | 16 | ➜ | 5AJ0 | 0.3981 | 0 | C | 649 | C | 650 | * | G | 491 | C | 492 | G | 493 | cWW | cWW | ||||||
50 | 17 | ➜ | 3P49 | 0.3989 | 0 | G | 38 | A | 39 | * | U | 49 | U | 50 | C | 51 | cWW | cWW | cSH | |||||
38 | 18 | ➜ | 3J9W | 0.3010 | 0 | G | 804 | G | 805 | * | C | 785 | A | 786 | C | 787 | cWW | cWW | cSH | |||||
37 | 19 | ➜ | 5J7L | 0.2914 | 0 | G | 757 | C | 758 | * | G | 738 | A | 739 | C | 740 | cWW | cWW | cSH | |||||
10 | 20 | ➜ | 4V19 | 0.2059 | 0 | U | 1438 | A | 1439 | * | U | 1043 | A | 1044 | A | 1045 | tHS | cWW | cWW | cSH | ||||
11 | 21 | ➜ | 5J7L | 0.2063 | 0 | U | 2617 | G | 2618 | * | C | 2050 | A | 2051 | A | 2052 | tHS | cWW | cWW | cSH | ||||
23 | 22 | ➜ | 5FDU | 0.2613 | 0 | C | 2629 | G | 2630 | * | C | 2072 | A | 2073 | G | 2074 | cWW | cWW | cSH | |||||
24 | 23 | ➜ | 4IOA | 0.2616 | 0 | C | 2596 | G | 2597 | * | C | 2033 | A | 2034 | G | 2035 | cWW | cWW | cSH | |||||
42 | 24 | ➜ | 3J9W | 0.3344 | 0 | C | 2646 | G | 2647 | * | C | 2079 | A | 2080 | G | 2081 | cWW | cWW | cSH | |||||
44 | 25 | ➜ | 3P49 | 0.3416 | 0 | G | 113 | G | 114 | * | C | 140 | U | 141 | C | 142 | cWW | cWW | cSH | |||||
57 | 26 | ➜ | 4V8P | 0.4573 | 0 | U | 2850 | G | 2851 | * | U | 2814 | U | 2815 | G | 2816 | ncWW | cWW | cWW | |||||
62 | 27 | ➜ | 4V91 | 0.4849 | 0 | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | ncWW | cWW | cWW | |||||
63 | 28 | ➜ | 5AJ0 | 0.4853 | 0 | U | 4401 | G | 4402 | * | U | 4365 | U | 4366 | G | 4367 | ncWW | cWW | cWW | |||||
65 | 29 | ➜ | 3J79 | 0.4902 | 0 | U | 3221 | G | 3222 | * | U | 3185 | U | 3186 | G | 3187 | ncWW | cWW | cWW | |||||
59 | 30 | ➜ | 3J7P | 0.4597 | 0 | U | 4439 | G | 4440 | * | U | 4403 | U | 4404 | G | 4405 | ncWW | cWW | cWW | |||||
41 | 31 | ➜ | 4V8P | 0.3227 | 0 | U | 473 | G | 474 | * | U | 503 | A | 504 | A | 505 | cWW | cWW | ncWS | ncSH | ||||
35 | 32 | ➜ | 4IOA | 0.2809 | 0 | U | 2472 | G | 2473 | * | U | 2436 | G | 2437 | A | 2438 | ntHS | cWW | cWW | |||||
28 | 33 | ➜ | 5FDU | 0.2697 | 0 | U | 2505 | G | 2506 | * | U | 2469 | G | 2470 | A | 2471 | ntHS | cWW | cWW | |||||
22 | 34 | ➜ | 4V4Q | 0.2595 | 0 | U | 644 | G | 645 | * | U | 594 | A | 595 | A | 596 | cWW | cWW | cSH | |||||
26 | 35 | ➜ | 1I6U | 0.2647 | 0 | U | 28 | G | 29 | * | U | 9 | A | 10 | A | 11 | tHS | cWW | cWW | cSH | ||||
34 | 36 | ➜ | 3J9W | 0.2803 | 0 | U | 653 | G | 654 | * | U | 603 | A | 604 | A | 605 | tHS | cWW | cWW | cSH | ||||
32 | 37 | ➜ | 4V9F | 0.2749 | 1 | U | 1205 | U | 1206 | * | A | 1191 | A | 1193 | A | 1194 | tHS | cWW | cWW | cSH | ||||
4 | 38 | ➜ | 1S03 | 0.1513 | 0 | U | 16 | G | 17 | * | C | 34 | A | 35 | A | 36 | tHS | cWW | cWW | cSH | ||||
7 | 39 | ➜ | 1S03 | 0.1619 | 0 | U | 16 | G | 17 | * | C | 34 | A | 35 | A | 36 | tHS | cWW | cWW | cSH | ||||
5 | 40 | ➜ | 4L81 | 0.1529 | 0 | U | 29 | G | 30 | * | C | 42 | A | 43 | A | 44 | cWW | cWW | cSH | |||||
2 | 41 | ➜ | 4IOA | 0.0824 | 0 | G | 2433 | G | 2434 | * | C | 2475 | A | 2476 | C | 2477 | cWW | cWW | ncSH | |||||
1 | 42 | ➜ | 5FDU | 0.0000 | 0 | G | 2466 | G | 2467 | * | C | 2508 | A | 2509 | C | 2510 | cWW | cWW | cSH | |||||
3 | 43 | ➜ | 4V9F | 0.1129 | 0 | G | 2489 | A | 2490 | * | U | 2531 | A | 2532 | C | 2533 | cWW | cWW | cSH | |||||
6 | 44 | ➜ | 3J9W | 0.1593 | 0 | G | 2483 | G | 2484 | * | C | 2525 | A | 2526 | C | 2527 | cWW | cWW | cSH | |||||
9 | 45 | ➜ | 3D0U | 0.1873 | 1 | G | 51 | G | 52 | * | C | 35 | A | 36 | C | 38 | cWW | cWW | cSH | |||||
16 | 46 | ➜ | 3JCS | 0.2388 | 0 | G | 1262 | G | 1263 | * | U | 1304 | C | 1305 | C | 1306 | cWW | cWW | ncSH | cSH | ||||
8 | 47 | ➜ | 3OX0 | 0.1684 | 0 | G | 35 | G | 36 | * | C | 68 | U | 69 | C | 70 | cWW | cWW | cSH | |||||
36 | 48 | ➜ | 1FJG | 0.2824 | 0 | G | 657 | G | 658 | * | C | 747 | C | 748 | C | 749 | cWW | cWW | cSH | |||||
18 | 49 | ➜ | 1G1X | 0.2522 | 0 | G | 657 | G | 658 | * | C | 747 | C | 748 | C | 749 | cWW | cWW | cSH | |||||
27 | 50 | ➜ | 1G1X | 0.2693 | 0 | G | 657 | G | 658 | * | C | 747 | C | 748 | C | 749 | cWW | cWW | cSH | |||||
15 | 51 | ➜ | 5FDU | 0.2378 | 0 | G | 291 | G | 292 | * | U | 392 | A | 393 | C | 394 | cWW | cWW | ||||||
14 | 52 | ➜ | 1XJR | 0.2344 | 0 | G | 13 | G | 14 | * | U | 37 | A | 38 | C | 39 | cWW | cWW | cSH | |||||
13 | 53 | ➜ | 4IOA | 0.2230 | 0 | Base triple twist | G | 2393 | G | 2394 | * | U | 2380 | A | 2381 | C | 2382 | cWW | cWW | |||||
19 | 54 | ➜ | 5FDU | 0.2531 | 0 | G | 2426 | G | 2427 | * | U | 2413 | C | 2414 | C | 2415 | cWW | cWW | cSH | |||||
20 | 55 | ➜ | 5AN9 | 0.2553 | 0 | G | 3156 | G | 3157 | * | U | 3198 | C | 3199 | C | 3200 | cWW | cWW | ncSH | |||||
12 | 56 | ➜ | 5AJ0 | 0.2145 | 0 | G | 4362 | G | 4363 | * | U | 4404 | C | 4405 | C | 4406 | cWW | cWW | cSH | |||||
21 | 57 | ➜ | 3J79 | 0.2580 | 0 | G | 3182 | G | 3183 | * | U | 3224 | C | 3225 | C | 3226 | cWW | cWW | cSH | |||||
31 | 58 | ➜ | 4V91 | 0.2745 | 0 | G | 2823 | G | 2824 | * | U | 2865 | U | 2866 | C | 2867 | cWW | cWW | ncSH | ncSH | ||||
33 | 59 | ➜ | 4V88 | 0.2785 | 0 | G | 2823 | G | 2824 | * | U | 2865 | U | 2866 | C | 2867 | cWW | cWW | ncSH | ncSH | ||||
25 | 60 | ➜ | 4V8P | 0.2618 | 0 | G | 2811 | G | 2812 | * | U | 2853 | C | 2854 | C | 2855 | cWW | cWW | ncSH | ncSH | ||||
45 | 61 | ➜ | 3J7P | 0.3489 | 0 | G | 4400 | G | 4401 | * | U | 4442 | C | 4443 | C | 4444 | ncWW | ncWW | cWW | cSH | ||||
47 | 62 | ➜ | 3J7Y | 0.3622 | 0 | G | 2941 | C | 2942 | * | G | 2983 | A | 2984 | C | 2985 | cWW | cWW | ||||||
46 | 63 | ➜ | 4V19 | 0.3598 | 0 | G | 1275 | C | 1276 | * | G | 1317 | A | 1318 | C | 1319 | cWW | cWW | ncSH | |||||
29 | 64 | ➜ | 3NKB | 0.2712 | 0 | U | 47 | C | 48 | * | G | 55 | U | 56 | A | 57 | cWW | cWW | cSH | |||||
40 | 65 | ➜ | 4BTS | 0.3159 | 0 | U | 1469 | C | 1470 | * | G | 1479 | U | 1480 | A | 1481 | cWW | cWW | ncSH | |||||
64 | 66 | ➜ | 3Q1Q | 0.4886 | 0 | G | 328 | C | 329 | * | G | 51 | U | 52 | C | 53 | cWW | cWW | ncSH | |||||
67 | 67 | ➜ | 3SUX | 0.5039 | 0 | G | 37 | A | 38 | * | U | 47 | G | 48 | U | 49 | cWW | ncWW | ncSH | |||||
66 | 68 | ➜ | 3SUX | 0.5039 | 0 | G | 37^ | A | 38^ | * | U | 47^ | G | 48^ | U | 49^ | cWW | ncWW | ncSH | |||||
69 | 69 | ➜ | 4V8P | 0.5716 | 1 | U | 2195 | G | 2196 | * | U | 2236 | A | 2237 | A | 2239 | cWW | cWW | ncSH | |||||
71 | 70 | ➜ | 5A2Q | 0.6489 | 0 | C | 114 | C | 115 | * | G | 47 | U | 48 | G | 49 | cWW | cWW | ||||||
85 | 71 | ➜ | 3J9W | 0.7611 | 0 | G | 2863 | G | 2864 | * | U | 2903 | A | 2904 | C | 2905 | cWW | cWW | ||||||
86 | 72 | ➜ | 5J7L | 0.7711 | 0 | G | 2838 | G | 2839 | * | U | 2878 | A | 2879 | C | 2880 | cWW | cWW | ||||||
75 | 73 | ➜ | 3J9W | 0.6647 | 1 | U | 2022 | C | 2023 | * | G | 1711 | G | 1712 | A | 1714 | cWW | cWW | ||||||
81 | 74 | ➜ | 3J7Y | 0.6731 | 0 | U | 2994 | G | 2995 | * | U | 3067 | G | 3068 | A | 3069 | ntHW | cWW | cWW | ncSH | ||||
76 | 75 | ➜ | 3J7P | 0.6673 | 0 | C | 4453 | G | 4454 | * | U | 4526 | G | 4527 | G | 4528 | cWW | ncWW | ||||||
77 | 76 | ➜ | 5AN9 | 0.6675 | 0 | C | 3209 | G | 3210 | * | U | 3282 | G | 3283 | G | 3284 | cWW | cWW | ||||||
70 | 77 | ➜ | 3J9W | 0.6318 | 0 | C | 2536 | G | 2537 | * | U | 2609 | G | 2610 | G | 2611 | cWW | cWW | ncHH | |||||
79 | 78 | ➜ | 4V19 | 0.6717 | 0 | U | 1328 | G | 1329 | * | U | 1401 | G | 1402 | A | 1403 | cWW | cWW | ncSH | |||||
82 | 79 | ➜ | 4V91 | 0.6736 | 0 | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | ||||||
80 | 80 | ➜ | 4V8P | 0.6721 | 0 | C | 2864 | G | 2865 | * | U | 2937 | G | 2938 | G | 2939 | cWW | cWW | ||||||
84 | 81 | ➜ | 3J79 | 0.6816 | 0 | C | 3235 | G | 3236 | * | U | 3308 | G | 3309 | G | 3310 | cWW | cWW | ||||||
83 | 82 | ➜ | 5AJ0 | 0.6754 | 0 | C | 4415 | G | 4416 | * | U | 4488 | G | 4489 | G | 4490 | cWW | cWW | cHH | |||||
78 | 83 | ➜ | 3JCS | 0.6683 | 0 | C | 1315 | G | 1316 | * | U | 1388 | G | 1389 | G | 1390 | cWW | cWW | ncHH | |||||
73 | 84 | ➜ | 4IOA | 0.6615 | 0 | C | 2486 | G | 2487 | * | U | 2559 | G | 2560 | G | 2561 | cWW | cWW | cHH | |||||
74 | 85 | ➜ | 3J79 | 0.6632 | 0 | C | 1823 | A | 1824 | * | U | 2001 | G | 2002 | G | 2003 | cWW | cWW | cHH | |||||
72 | 86 | ➜ | 3J9W | 0.6606 | 0 | U | 2522 | G | 2523 | * | U | 2486 | U | 2487 | A | 2488 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CG*UGG | 9 |
GG*UCC | 7 |
UC*GGAA | 5 |
UG*UUG | 5 |
GG*UAC | 5 |
GA*UGAC | 5 |
UG*CAA | 4 |
UG*UGA | 4 |
UG*UAA | 4 |
GG*CAC | 4 |
GG*CCC | 3 |
GC*GAC | 3 |
UC*GAAA | 3 |
CG*CAG | 3 |
GA*UGU | 2 |
GG*CUC | 2 |
GG*CAUC | 2 |
UC*GUA | 2 |
GG*UUC | 2 |
UG*UAAA | 1 |
CC*GUG | 1 |
UG*UUA | 1 |
CA*UGG | 1 |
GG*CGUC | 1 |
GC*GGC | 1 |
CC*GCG | 1 |
GA*UUC | 1 |
UU*AAAA | 1 |
GA*UAC | 1 |
UA*UAA | 1 |
GC*GUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*A | 25 |
*G | 17 |
*U | 15 |
*C | 11 |
*GA | 10 |
*AA | 5 |
*AU | 2 |
*GU | 1 |
Release history
Release | 2.0 |
---|---|
Date | 2017-04-24 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Base triple twist (1)
- Basepair signature
- cWW-tHS-cSH-cWW
- Intraclusteral linkage
- Min 0.04 | Avg 0.52 | Max 1.00
Coloring options: