Description:
Hoogsteen-edge Platform, Single bulged base
Basepair signature:
cWW-tHS-cSH-cWW
Free text annotation:
Some instances have additional bulged base
Intraclusteral linkage
Min 0.04 | Avg 0.52 | Max 1.00
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2break 3 4 51-31-41-52-32-43-54-5
1425FDU0.00000G2466G2467*C2508A2509C2510cWWcWWcSH
2414IOA0.08240G2433G2434*C2475A2476C2477cWWcWWncSH
3434V9F0.11290G2489A2490*U2531A2532C2533cWWcWWcSH
4381S030.15130U16G17*C34A35A36tHScWWcWWcSH
5404L810.15290U29G30*C42A43A44cWWcWWcSH
6443J9W0.15930G2483G2484*C2525A2526C2527cWWcWWcSH
7391S030.16190U16G17*C34A35A36tHScWWcWWcSH
8473OX00.16840G35G36*C68U69C70cWWcWWcSH
9453D0U0.18731G51G52*C35A36C38cWWcWWcSH
10204V190.20590U1438A1439*U1043A1044A1045tHScWWcWWcSH
11215J7L0.20630U2617G2618*C2050A2051A2052tHScWWcWWcSH
12565AJ00.21450G4362G4363*U4404C4405C4406cWWcWWcSH
13534IOA0.22300G2393G2394*U2380A2381C2382cWWcWW
14521XJR0.23440G13G14*U37A38C39cWWcWWcSH
15515FDU0.23780G291G292*U392A393C394cWWcWW
16463JCS0.23880G1262G1263*U1304C1305C1306cWWcWWncSHcSH
17124V190.24521U543C544*G529A531A532ntHScWWcWWcSH
18491G1X0.25220G657G658*C747C748C749cWWcWWcSH
19545FDU0.25310G2426G2427*U2413C2414C2415cWWcWWcSH
20555AN90.25530G3156G3157*U3198C3199C3200cWWcWWncSH
21573J790.25800G3182G3183*U3224C3225C3226cWWcWWcSH
22344V4Q0.25950U644G645*U594A595A596cWWcWWcSH
23225FDU0.26130C2629G2630*C2072A2073G2074cWWcWWcSH
24234IOA0.26160C2596G2597*C2033A2034G2035cWWcWWcSH
25604V8P0.26180G2811G2812*U2853C2854C2855cWWcWWncSHncSH
26351I6U0.26470U28G29*U9A10A11tHScWWcWWcSH
27501G1X0.26930G657G658*C747C748C749cWWcWWcSH
28335FDU0.26970U2505G2506*U2469G2470A2471ntHScWWcWW
29643NKB0.27120U47C48*G55U56A57cWWcWWcSH
30133J7Y0.27381U2211C2212*G2197A2199A2200ntHScWWcWWcSH
31584V910.27450G2823G2824*U2865U2866C2867cWWcWWncSHncSH
32374V9F0.27491U1205U1206*A1191A1193A1194tHScWWcWWcSH
33594V880.27850G2823G2824*U2865U2866C2867cWWcWWncSHncSH
34363J9W0.28030U653G654*U603A604A605tHScWWcWWcSH
35324IOA0.28090U2472G2473*U2436G2437A2438ntHScWWcWW
36481FJG0.28240G657G658*C747C748C749cWWcWWcSH
37195J7L0.29140G757C758*G738A739C740cWWcWWcSH
38183J9W0.30100G804G805*C785A786C787cWWcWWcSH
39111FJG0.30350G644C645*G594G595C596tHScWWcWWcSH
40654BTS0.31590U1469C1470*G1479U1480A1481cWWcWWncSH
41314V8P0.32270U473G474*U503A504A505cWWcWWncWSncSH
42243J9W0.33440C2646G2647*C2079A2080G2081cWWcWWcSH
43153DIR0.33761G54G55*C38A39C41cWWcWW
44253P490.34160G113G114*C140U141C142cWWcWWcSH
45613J7P0.34890G4400G4401*U4442C4443C4444ncWWncWWcWWcSH
46634V190.35980G1275C1276*G1317A1318C1319cWWcWWncSH
47623J7Y0.36220G2941C2942*G2983A2984C2985cWWcWW
48141QA60.38691U151C152*G137A139A140tHScWWcWWcSH
49165AJ00.39810C649C650*G491C492G493cWWcWW
50173P490.39890G38A39*U49U50C51cWWcWWcSH
5171FJG0.40351G654A655*U751G752C754tHScWWcWWncSHncSH
5284V4Q0.40871G654A655*U751G752C754tHScWWcWWncSHncSH
5351G1X0.42031G654A655*U751G752C754tHScWWcWWncSHncSH
5461G1X0.42051G654A655*U751G752C754tHScWWcWWncSHncSH
5593J9W0.44041G663A664*U760G761C763ntHScWWcWW
5625J7L0.44291U1993C1994*G1666G1667A1669tHScWWcWW
57264V8P0.45730U2850G2851*U2814U2815G2816ncWWcWWcWW
58104QLM0.45771G39G40*C91G92C94tHScWWcWWncSH
59303J7P0.45970U4439G4440*U4403U4404G4405ncWWcWWcWW
6044V190.46911U986C987*G799G800A802tHScWWcWW
6133J790.47881U2629C2630*G2166G2167A2169tHScWWcWW
62274V910.48490U2862G2863*U2826U2827G2828ncWWcWWcWW
63285AJ00.48530U4401G4402*U4365U4366G4367ncWWcWWcWW
64663Q1Q0.48860G328C329*G51U52C53cWWcWWncSH
65293J790.49020U3221G3222*U3185U3186G3187ncWWcWWcWW
66683SUX0.50390G37^A38^*U47^G48^U49^cWWncWWncSH
67673SUX0.50390G37A38*U47G48U49cWWncWWncSH
6813J7P0.50751U3840C3841*G2847G2848A2850tHScWWcWW
69694V8P0.57161U2195G2196*U2236A2237A2239cWWcWWncSH
70773J9W0.63180C2536G2537*U2609G2610G2611cWWcWWncHH
71705A2Q0.64890C114C115*G47U48G49cWWcWW
72863J9W0.66060U2522G2523*U2486U2487A2488cWWcWW
73844IOA0.66150C2486G2487*U2559G2560G2561cWWcWWcHH
74853J790.66320C1823A1824*U2001G2002G2003cWWcWWcHH
75733J9W0.66471U2022C2023*G1711G1712A1714cWWcWW
76753J7P0.66730C4453G4454*U4526G4527G4528cWWncWW
77765AN90.66750C3209G3210*U3282G3283G3284cWWcWW
78833JCS0.66830C1315G1316*U1388G1389G1390cWWcWWncHH
79784V190.67170U1328G1329*U1401G1402A1403cWWcWWncSH
80804V8P0.67210C2864G2865*U2937G2938G2939cWWcWW
81743J7Y0.67310U2994G2995*U3067G3068A3069ntHWcWWcWWncSH
82794V910.67360C2876G2877*U2949G2950G2951cWWcWW
83825AJ00.67540C4415G4416*U4488G4489G4490cWWcWWcHH
84813J790.68160C3235G3236*U3308G3309G3310cWWcWW
85713J9W0.76110G2863G2864*U2903A2904C2905cWWcWW
86725J7L0.77110G2838G2839*U2878A2879C2880cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CG*UGG9
GG*UCC7
GG*UAC5
UG*UUG5
GA*UGAC5
UC*GGAA5
UG*UAA4
GG*CAC4
UG*UGA4
UG*CAA4
GC*GAC3
CG*CAG3
UC*GAAA3
GG*CCC3
GG*CUC2
GA*UGU2
UC*GUA2
GG*UUC2
GG*CAUC2
CA*UGG1
CC*GUG1
GC*GUC1
UG*UUA1
UG*UAAA1
UU*AAAA1
UA*UAA1
GA*UAC1
GC*GGC1
CC*GCG1
GA*UUC1
GG*CGUC1
Non-Watson-Crick part of the motif
SequenceCounts
*A25
*G17
*U15
*C11
*GA10
*AA5
*AU2
*GU1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Coloring options:

Mutual discrepancy heat map legend: