1 IL_3J7P_094 3J7P 0.5075 1 Major groove platform; stack outside cWW (H) 5 LSU rRNA U 3840 C 3841 * G 2847 G 2848 A 2850 tHS cWW cWW
2 IL_5J7L_306 5J7L 0.4429 1 Major groove platform; stack outside cWW DA LSU rRNA U 1993 C 1994 * G 1666 G 1667 A 1669 tHS cWW cWW
3 IL_3J79_075 3J79 0.4788 1 A LSU rRNA U 2629 C 2630 * G 2166 G 2167 A 2169 tHS cWW cWW
4 IL_4V19_028 4V19 0.4691 1 A LSU rRNA U 986 C 987 * G 799 G 800 A 802 tHS cWW cWW
5 IL_1G1X_001 1G1X 0.4203 1 Major groove platform; stack outside cWW D+E 16S RIBOSOMAL RNA G 654 A 655 * U 751 G 752 C 754 tHS cWW cWW ncSH
6 IL_1G1X_004 1G1X 0.4205 1 Major groove platform; stack outside cWW I+J 16S RIBOSOMAL RNA G 654 A 655 * U 751 G 752 C 754 tHS cWW cWW ncSH
7 IL_1FJG_027 1FJG 0.4035 1 Major groove platform; stack outside cWW (H) A SSU rRNA G 654 A 655 * U 751 G 752 C 754 tHS cWW cWW ncSH
8 IL_4V4Q_211 4V4Q 0.4087 1 Major groove platform; stack outside cWW (H) CA SSU rRNA G 654 A 655 * U 751 G 752 C 754 tHS cWW cWW
9 IL_3J9W_026 3J9W 0.4404 1 AA SSU rRNA G 663 A 664 * U 760 G 761 C 763 ntHS cWW cWW
10 IL_4QLM_004 4QLM 0.4577 1 Major groove platform; stack outside cWW A cyclic di-AMP riboswitch G 39 G 40 * C 91 G 92 C 94 tHS cWW cWW
11 IL_1FJG_024 1FJG 0.3035 0 Major groove platform (H) A SSU rRNA G 644 C 645 * G 594 G 595 C 596 ntHS cWW cWW ncSH
12 IL_4V19_020 4V19 0.2452 1 A LSU rRNA U 543 C 544 * G 529 A 531 A 532 ntHS cWW cWW cSH
13 IL_3J7Y_024 3J7Y 0.2738 1 A LSU rRNA U 2211 C 2212 * G 2197 A 2199 A 2200 cWW cWW cSH
14 IL_1QA6_004 1QA6 0.3869 1 D LSU rRNA U 151 C 152 * G 137 A 139 A 140 ntHS cWW cWW cSH
15 IL_3DIR_004 3DIR 0.3376 1 A Lysine riboswitch G 54 G 55 * C 38 A 39 C 41 cWW cWW
16 IL_5AJ0_033 5AJ0 0.3981 0 A2 LSU rRNA C 649 C 650 * G 491 C 492 G 493 cWW cWW
17 IL_3P49_007 3P49 0.3989 0 A Glycine riboswitch G 38 A 39 * U 49 U 50 C 51 ncWW cWW ncSH
18 IL_3J9W_087 3J9W 0.3010 0 Major groove platform (H) BA LSU rRNA G 804 G 805 * C 785 A 786 C 787 cWW cWW cSH
19 IL_5J7L_264 5J7L 0.2914 0 Major groove platform DA LSU rRNA G 757 C 758 * G 738 A 739 C 740 cWW cWW cSH
20 IL_4V19_036 4V19 0.2059 0 Major groove platform (H) A LSU rRNA U 1438 A 1439 * U 1043 A 1044 A 1045 ntHS cWW cWW cSH
21 IL_5J7L_320 5J7L 0.2063 0 Major groove platform DA LSU rRNA U 2617 G 2618 * C 2050 A 2051 A 2052 tHS cWW cWW cSH
22 IL_5FDU_079 5FDU 0.2613 0 Major groove platform (H) 1A LSU rRNA C 2629 G 2630 * C 2072 A 2073 G 2074 cWW cWW cSH
23 IL_4IOA_073 4IOA 0.2616 0 Major groove platform (H) X LSU rRNA C 2596 G 2597 * C 2033 A 2034 G 2035 cWW cWW cSH
24 IL_3J9W_146 3J9W 0.3344 0 Major groove platform (H) BA LSU rRNA C 2646 G 2647 * C 2079 A 2080 G 2081 cWW cWW cSH
25 IL_3P49_010 3P49 0.3416 0 A Glycine riboswitch G 113 G 114 * C 140 U 141 C 142 cWW cWW ncSH
26 IL_4V8P_410 4V8P 0.4573 0 F1 LSU rRNA U 2850 G 2851 * U 2814 U 2815 G 2816 cWW cWW
27 IL_4V91_113 4V91 0.4849 0 Major groove platform (H) 1 LSU rRNA U 2862 G 2863 * U 2826 U 2827 G 2828 cWW cWW
28 IL_5AJ0_148 5AJ0 0.4853 0 Major groove platform (H) A2 LSU rRNA U 4401 G 4402 * U 4365 U 4366 G 4367 cWW cWW
29 IL_3J79_101 3J79 0.4902 0 Major groove platform (H) A LSU rRNA U 3221 G 3222 * U 3185 U 3186 G 3187 cWW cWW
30 IL_3J7P_120 3J7P 0.4597 0 5 LSU rRNA U 4439 G 4440 * U 4403 U 4404 G 4405 cWW ncWW
31 IL_4V8P_323 4V8P 0.3227 0 F1 LSU rRNA U 473 G 474 * U 503 A 504 A 505 cWW ncWW ncSH
32 IL_4IOA_087 4IOA 0.2809 0 X LSU rRNA U 2472 G 2473 * U 2436 G 2437 A 2438 ntHS cWW cWW
33 IL_5FDU_095 5FDU 0.2697 0 Major groove platform (H) 1A LSU rRNA U 2505 G 2506 * U 2469 G 2470 A 2471 ntHS cWW cWW
34 IL_4V4Q_208 4V4Q 0.2595 0 Major groove platform (H) CA SSU rRNA U 644 G 645 * U 594 A 595 A 596 cWW cWW ncSH
35 IL_1I6U_001 1I6U 0.2647 0 Major groove platform C 16S RRNA FRAGMENT U 28 G 29 * U 9 A 10 A 11 ntHS cWW cWW cSH
36 IL_3J9W_022 3J9W 0.2803 0 Major groove platform (H) AA SSU rRNA U 653 G 654 * U 603 A 604 A 605 ntHS cWW cWW cSH
37 IL_4V9F_044 4V9F 0.2749 1 Major groove platform 0 LSU rRNA U 1205 U 1206 * A 1191 A 1193 A 1194 ntHS cWW cWW cSH
38 IL_1S03_004 1S03 0.1513 0 Major groove platform A 47-MER U 16 G 17 * C 34 A 35 A 36 tHS cWW cWW cSH
39 IL_1S03_008 1S03 0.1619 0 Major groove platform B 47-MER U 16 G 17 * C 34 A 35 A 36 tHS cWW cWW cSH
40 IL_4L81_002 4L81 0.1529 0 A SAM-I-IV-variant U 29 G 30 * C 42 A 43 A 44 ntHS cWW cWW ncSH
41 IL_4IOA_086 4IOA 0.0824 0 Major groove platform (H) X LSU rRNA G 2433 G 2434 * C 2475 A 2476 C 2477 cWW cWW ncSH
42 IL_5FDU_094 5FDU 0.0000 0 1A LSU rRNA G 2466 G 2467 * C 2508 A 2509 C 2510 cWW cWW cSH
43 IL_4V9F_082 4V9F 0.1129 0 Major groove platform 0 LSU rRNA G 2489 A 2490 * U 2531 A 2532 C 2533 cWW cWW cSH
44 IL_3J9W_161 3J9W 0.1593 0 Major groove platform (H) BA LSU rRNA G 2483 G 2484 * C 2525 A 2526 C 2527 cWW cWW cSH
45 IL_3D0U_004 3D0U 0.1873 1 Major groove platform; stack outside cWW A Lysine riboswitch G 51 G 52 * C 35 A 36 C 38 cWW cWW cSH
46 IL_3JCS_101 3JCS 0.2388 0 Major groove platform (H) 2 LSU rRNA G 1262 G 1263 * U 1304 C 1305 C 1306 cWW cWW ncSH cSH
47 IL_3OX0_003 3OX0 0.1684 0 A Glycine riboswitch G 35 G 36 * C 68 U 69 C 70 cWW cWW cSH
48 IL_1FJG_028 1FJG 0.2824 0 Major groove platform (H) A SSU rRNA G 657 G 658 * C 747 C 748 C 749 cWW cWW ncSH
49 IL_1G1X_005 1G1X 0.2522 0 Major groove platform I+J 16S RIBOSOMAL RNA G 657 G 658 * C 747 C 748 C 749 cWW cWW ncSH
50 IL_1G1X_002 1G1X 0.2693 0 Major groove platform D+E 16S RIBOSOMAL RNA G 657 G 658 * C 747 C 748 C 749 cWW cWW ncSH
51 IL_5FDU_009 5FDU 0.2378 0 Major groove platform (H) 1A LSU rRNA G 291 G 292 * U 392 A 393 C 394 cWW cWW ncSH
52 IL_1XJR_002 1XJR 0.2344 0 Major groove platform A s2m RNA G 13 G 14 * U 37 A 38 C 39 cWW cWW cSH
53 IL_4IOA_084 4IOA 0.2230 0 Major groove platform X LSU rRNA G 2393 G 2394 * U 2380 A 2381 C 2382 cWW cWW
54 IL_5FDU_092 5FDU 0.2531 0 Major groove platform (H) 1A LSU rRNA G 2426 G 2427 * U 2413 C 2414 C 2415 cWW cWW ncSH
55 IL_5AN9_035 5AN9 0.2553 0 N LSU rRNA G 3156 G 3157 * U 3198 C 3199 C 3200 cWW cWW ncSH
56 IL_5AJ0_146 5AJ0 0.2145 0 Major groove platform (H) A2 LSU rRNA G 4362 G 4363 * U 4404 C 4405 C 4406 cWW cWW cSH
57 IL_3J79_099 3J79 0.2580 0 Major groove platform (H) A LSU rRNA G 3182 G 3183 * U 3224 C 3225 C 3226 cWW cWW
58 IL_4V91_111 4V91 0.2745 0 Major groove platform (H) 1 LSU rRNA G 2823 G 2824 * U 2865 U 2866 C 2867 cWW cWW ncSH
59 IL_4V88_349 4V88 0.2785 0 Major groove platform (H) A5 LSU rRNA G 2823 G 2824 * U 2865 U 2866 C 2867 cWW cWW ncSH cSH
60 IL_4V8P_408 4V8P 0.2618 0 F1 LSU rRNA G 2811 G 2812 * U 2853 C 2854 C 2855 cWW cWW ncSH
61 IL_3J7P_118 3J7P 0.3489 0 Major groove platform (H) 5 LSU rRNA G 4400 G 4401 * U 4442 C 4443 C 4444 ncWW ncSH
62 IL_3J7Y_047 3J7Y 0.3622 0 Major groove platform (H) A LSU rRNA G 2941 C 2942 * G 2983 A 2984 C 2985 cWW cWW
63 IL_4V19_045 4V19 0.3598 0 Major groove platform (H) A LSU rRNA G 1275 C 1276 * G 1317 A 1318 C 1319 cWW cWW ncSH
64 IL_3NKB_002 3NKB 0.2712 0 Major groove platform B Hepatitis delta virus ribozyme U 47 C 48 * G 55 U 56 A 57 cWW cWW cSH
65 IL_4BTS_336 4BTS 0.3159 0 DA SSU rRNA U 1469 C 1470 * G 1479 U 1480 A 1481 cWW cWW ncSH
66 IL_3Q1Q_001 3Q1Q 0.4886 0 B RNase P class A G 328 C 329 * G 51 U 52 C 53 cWW cWW ncSH
67 IL_3SUX_002 3SUX 0.5039 0 Major groove platform X THF riboswitch G 37 A 38 * U 47 G 48 U 49 cWW ncWW
68 IL_3SUX_005 3SUX 0.5039 0 Major groove platform X THF riboswitch G 37||||17_555 A 38||||17_555 * U 47||||17_555 G 48||||17_555 U 49||||17_555 cWW ncWW
69 IL_4V8P_389 4V8P 0.5716 1 F1 LSU rRNA U 2195 G 2196 * U 2236 A 2237 A 2239 cWW cWW
70 IL_5A2Q_092 5A2Q 0.6489 0 3 IRES C 114 C 115 * G 47 U 48 G 49 cWW cWW
71 IL_3J9W_176 3J9W 0.7611 0 Major groove intercalation (H) BA LSU rRNA G 2863 G 2864 * U 2903 A 2904 C 2905 cWW cWW
72 IL_5J7L_352 5J7L 0.7711 0 Major groove intercalation DA LSU rRNA G 2838 G 2839 * U 2878 A 2879 C 2880 cWW cWW
73 IL_3J9W_132 3J9W 0.6647 1 Major groove platform; stack outside cWW (H) BA LSU rRNA U 2022 C 2023 * G 1711 G 1712 A 1714 cWW cWW
74 IL_3J7Y_052 3J7Y 0.6731 0 Major groove platform (H) A LSU rRNA U 2994 G 2995 * U 3067 G 3068 A 3069 cWW cWW
75 IL_3J7P_123 3J7P 0.6673 0 5 LSU rRNA C 4453 G 4454 * U 4526 G 4527 G 4528 cWW ncWW
76 IL_5AN9_040 5AN9 0.6675 0 Major groove platform (H) N LSU rRNA C 3209 G 3210 * U 3282 G 3283 G 3284 cWW cWW
77 IL_3J9W_165 3J9W 0.6318 0 Major groove platform (H) BA LSU rRNA C 2536 G 2537 * U 2609 G 2610 G 2611 cWW cWW chH
78 IL_4V19_049 4V19 0.6717 0 Major groove platform (H) A LSU rRNA U 1328 G 1329 * U 1401 G 1402 A 1403 cWW cWW
79 IL_4V91_116 4V91 0.6736 0 Major groove platform (H) 1 LSU rRNA C 2876 G 2877 * U 2949 G 2950 G 2951 cWW cWW
80 IL_4V8P_413 4V8P 0.6721 0 Major groove platform (H) F1 LSU rRNA C 2864 G 2865 * U 2937 G 2938 G 2939 cWW cWW
81 IL_3J79_104 3J79 0.6816 0 Major groove platform (H) A LSU rRNA C 3235 G 3236 * U 3308 G 3309 G 3310 cWW cWW
82 IL_5AJ0_151 5AJ0 0.6754 0 Major groove platform (H) A2 LSU rRNA C 4415 G 4416 * U 4488 G 4489 G 4490 cWW cWW
83 IL_3JCS_103 3JCS 0.6683 0 Major groove platform (H) 2 LSU rRNA C 1315 G 1316 * U 1388 G 1389 G 1390 cWW cWW chH
84 IL_4IOA_090 4IOA 0.6615 0 Major groove platform (H) X LSU rRNA C 2486 G 2487 * U 2559 G 2560 G 2561 cWW cWW chH
85 IL_3J79_066 3J79 0.6632 0 A LSU rRNA C 1823 A 1824 * U 2001 G 2002 G 2003 cWW cWW chH
86 IL_3J9W_162 3J9W 0.6606 0 BA LSU rRNA U 2522 G 2523 * U 2486 U 2487 A 2488 cWW cWW
