Motif IL_96830.1 Version IL_96830.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-6 | 4-5 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5AN9 | 0.2994 | 1 | N | LSU rRNA | G | 1469 | U | 1470 | G | 1472 | C | 1473 | * | G | 1485 | U | 1486 | A | 1487 | U | 1488 | C | 1489 | cWW | ncWW | cWW | ||
| 2 | ➜ | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | G | 1163 | U | 1164 | A | 1166 | G | 1167 | * | C | 1179 | U | 1180 | A | 1181 | C | 1182 | C | 1183 | cWW | ncWW | cWW | ||
| 3 | ➜ | 4V88 | 0.2224 | 1 | A5 | LSU rRNA | G | 1234 | U | 1235 | G | 1237 | C | 1238 | * | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | cWW | cWW | cWW | ||
| 4 | ➜ | 3J7P | 0.6421 | 1 | 5 | LSU rRNA | G | 1973 | U | 1974 | G | 1976 | C | 1977 | * | G | 1989 | A | 1990 | A | 1991 | U | 1992 | C | 1993 | cWW | ncWW | cWW | ncWW | |
| 5 | ➜ | 4V91 | 0.6704 | 1 | 1 | LSU rRNA | G | 1234 | U | 1235 | G | 1237 | C | 1238 | * | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGC*GAAUC | 3 |
| GUGAG*CUACC | 1 |
| GUGGC*GUAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGG*AAU | 3 |
| UGA*UAC | 1 |
| UGG*UAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.22 | Avg 0.44 | Max 0.74
Coloring options: