Equivalence class NR_2.5_50478.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6F|1|D (rep) | RNA (5'-R(P*GP*C)-3') | synthetic construct | Synthetic | Vibrio cholerae Oligoribonuclease bound to pGC | X-ray diffraction | 1.74 | 2019-06-12 | ||
| 2 | 4OHY|1|B | RNA (5'-R(*GP*C)-3') | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-ray diffraction | 2 | 2014-05-14 | ||||
| 3 | 4OI1|1|B | RNA (5'-R(*GP*C)-3') | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-ray diffraction | 2.3 | 2014-05-14 | ||||
| 4 | 4OI0|1|B | RNA (5'-R(*GP*C)-3') | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-ray diffraction | 2.2 | 2014-05-14 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4OI0|1|B | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-RAY DIFFRACTION | 2.2 | 2 |
| 2 | 4OI1|1|B | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-RAY DIFFRACTION | 2.3 | 2 |
| 3 | 4OHY|1|B | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-RAY DIFFRACTION | 2 | 2 |
| 4 | 6N6F|1|D | Vibrio cholerae Oligoribonuclease bound to pGC | X-RAY DIFFRACTION | 1.74 | 3 |