BGSU RNA Site //

Equivalence class NR_2.5_97151.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
13TD1|1|B+ 3TD1|1|A (rep)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-ray diffraction2.12011-12-07
21MWL|1|A+ 1MWL|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-ray diffraction2.42003-02-18
34WCP|1|A+ 4WCP|1|B+ 4WCP|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-ray diffraction2.42015-09-09
44F8U|1|A+ 4F8U|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-ray diffraction22012-08-15
52ET4|1|A+ 2ET4|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Neomycin B and the 16S-RRNA A-SiteX-ray diffraction2.42005-12-13
62ET5|1|A+ 2ET5|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Ribostamycin and the 16S-RRNA A-SiteX-ray diffraction2.22005-12-13
72PWT|1|A+ 2PWT|1|B22-mer of the ribosomal decoding siteCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-ray diffraction1.82007-09-18
82ESJ|1|A+ 2ESJ|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Lividomycin A and the 16S-Rrna A SiteX-ray diffraction2.22005-12-20
93WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-ray diffraction2.32014-11-05
104K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaEukaryaCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-ray diffraction2.52013-07-31
114WCQ|1|A+ 4WCQ|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.12015-09-09
121J7T|1|A+ 1J7T|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-ray diffraction2.52002-05-18
134P3S|1|B+ 4P3S|1|A5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructSyntheticCrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.32016-05-04

Release history

Release2.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_97151.1NR_2.5_25780.12.93(1) 4WCP|1|A+4WCP|1|B+4WCP|1|C(12) 3TD1|1|B+3TD1|1|A, 1MWL|1|A+1MWL|1|B, 4P3S|1|B+4P3S|1|A, 2PWT|1|A+2PWT|1|B, 1J7T|1|A+1J7T|1|B, 4K32|1|A+4K32|1|B, 2ET5|1|A+2ET5|1|B, 4F8U|1|A+4F8U|1|B, 2ET4|1|A+2ET4|1|B, 3WRU|1|A+3WRU|1|B, 2ESJ|1|A+2ESJ|1|B, 4WCQ|1|A+4WCQ|1|B(0)
NR_2.5_97151.1NR_2.5_27927.12.93(6) 2ESJ|1|A+2ESJ|1|B, 2ET5|1|A+2ET5|1|B, 1MWL|1|A+1MWL|1|B, 2ET4|1|A+2ET4|1|B, 1J7T|1|A+1J7T|1|B, 4F8U|1|A+4F8U|1|B(7) 4WCP|1|A+4WCP|1|B+4WCP|1|C, 3WRU|1|A+3WRU|1|B, 3TD1|1|B+3TD1|1|A, 4P3S|1|B+4P3S|1|A, 2PWT|1|A+2PWT|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B(3) 2ET8|1|A+2ET8|1|B, 1O9M|1|A+1O9M|1|B, 3BNT|1|A
NR_2.5_97151.1NR_2.5_36270.12.93(1) 2PWT|1|A+2PWT|1|B(12) 2ESJ|1|A+2ESJ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2ET5|1|A+2ET5|1|B, 4F8U|1|A+4F8U|1|B, 1MWL|1|A+1MWL|1|B, 4P3S|1|B+4P3S|1|A, 2ET4|1|A+2ET4|1|B, 4WCQ|1|A+4WCQ|1|B, 3TD1|1|B+3TD1|1|A, 1J7T|1|A+1J7T|1|B, 4K32|1|A+4K32|1|B, 3WRU|1|A+3WRU|1|B(4) 3BNO|1|A+3BNO|1|B, 3BNO|1|C+3BNO|1|D, 3BNN|1|A+3BNN|1|B, 3BNN|1|C+3BNN|1|D
NR_2.5_97151.1NR_2.5_43554.42.93(5) 4WCQ|1|A+4WCQ|1|B, 3TD1|1|B+3TD1|1|A, 4K32|1|A+4K32|1|B, 3WRU|1|A+3WRU|1|B, 4P3S|1|B+4P3S|1|A(8) 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 4F8U|1|A+4F8U|1|B, 1J7T|1|A+1J7T|1|B, 2ET5|1|A+2ET5|1|B, 1MWL|1|A+1MWL|1|B, 2PWT|1|A+2PWT|1|B(9) 3BNS|1|A+3BNS|1|B, 4K31|1|B+4K31|1|C, 3BNS|1|C+3BNS|1|D, 3BNR|1|C+3BNR|1|D, 3BNR|1|A+3BNR|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNQ|1|A+3BNQ|1|B, 3TD0|1|B+3TD0|1|A, 2FQN|1|A+2FQN|1|B

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_97151.1NR_2.5_97151.23.0(13) 1J7T|1|A+1J7T|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4P3S|1|B+4P3S|1|A, 4K32|1|A+4K32|1|B, 4F8U|1|A+4F8U|1|B, 3WRU|1|A+3WRU|1|B, 3TD1|1|B+3TD1|1|A, 2PWT|1|A+2PWT|1|B, 2ET5|1|A+2ET5|1|B, 2ET4|1|A+2ET4|1|B, 2ESJ|1|A+2ESJ|1|B, 1MWL|1|A+1MWL|1|B, 4WCQ|1|A+4WCQ|1|B(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14F8U|1|A+4F8U|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION222
21MWL|1|A+1MWL|1|BCrystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.424
32ESJ|1|A+2ESJ|1|BComplex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.221
41J7T|1|A+1J7T|1|BComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.521
52ET4|1|A+2ET4|1|BComplex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.421
62ET5|1|A+2ET5|1|BComplex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.221
72PWT|1|A+2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
83WRU|1|A+3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.321
94P3S|1|B+4P3S|1|ACrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.321
103TD1|1|B+3TD1|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.122
114WCQ|1|A+4WCQ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
124WCP|1|A+4WCP|1|B+4WCP|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.422
134K32|1|A+4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.521
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