Equivalence class NR_20.0_56101.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZP8|1|v (rep) | Transfer RNA | Pro-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | Electron microscopy | 2.2 | 2022-08-10 |
| 2 | 7Z20|1|v | Transfer RNA | Pro-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.29 | 2022-08-10 |
| 3 | 7ZOD|1|v | Transfer RNA | Pro-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia | Electron microscopy | 2.56 | 2022-08-10 |
| 4 | 7O1A|1|B8 | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.4 | 2021-09-01 |
| 5 | 7O1C|1|B8 | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | Electron microscopy | 2.6 | 2021-09-01 |
| 6 | 7O19|1|B8 | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.9 | 2021-09-01 |
| 7 | 6SZS|1|x | Transfer RNA | P-site tRNA-Pro(CGG), mRNA | Escherichia coli | Bacteria | RF00005 | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | Electron microscopy | 3.06 | 2019-12-04 |
| 8 | 5MGP|1|x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
| 9 | 6ENU|1|x | Transfer RNA | Proline tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | Electron microscopy | 3.1 | 2017-11-22 |
| 10 | 6ENF|1|x | Transfer RNA | proline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | Electron microscopy | 3.2 | 2017-11-22 |
| 11 | 7CPJ|1|9 | Transfer RNA | P/P tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | ycbZ-stalled 70S ribosome | Electron microscopy | 3.3 | 2021-12-08 |
| 12 | 6NUO|1|XV | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli | Bacteria | RF00005 | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.2 | 2020-10-14 |
| 13 | 6NUO|1|QV | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli | Bacteria | RF00005 | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.2 | 2020-10-14 |
| 14 | 6ENJ|1|x | Transfer RNA | Proline tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
| 15 | 6ENJ|1|9 | Transfer RNA | Proline tRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
| 16 | 6O3M|1|QV | Transfer RNA | P-site ASLPro, mRNA | Escherichia coli | Bacteria | RF00005 | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.97 | 2020-10-14 |
| 17 | 6O3M|1|XV | Transfer RNA | P-site ASLPro, mRNA | Escherichia coli | Bacteria | RF00005 | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.97 | 2020-10-14 |
Release history
| Release | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_56101.4 | NR_20.0_56101.3 | 3.243 | (14) 6SZS|1|x, 6O3M|1|XV, 6O3M|1|QV, 6NUO|1|XV, 6NUO|1|QV, 6ENU|1|x, 6ENJ|1|x, 7O1C|1|B8, 6ENJ|1|9, 7O1A|1|B8, 6ENF|1|x, 7O19|1|B8, 5MGP|1|x, 7CPJ|1|9 | (3) 7ZOD|1|v, 7Z20|1|v, 7ZP8|1|v | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7ZOD|1|v | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia | ELECTRON MICROSCOPY | 2.56 | 77 |
| 2 | 6ENJ|1|9 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 |
| 3 | 6ENJ|1|x | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 |
| 4 | 6ENU|1|x | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.1 | 77 |
| 5 | 6ENF|1|x | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | ELECTRON MICROSCOPY | 3.2 | 77 |
| 6 | 7CPJ|1|9 | ycbZ-stalled 70S ribosome | ELECTRON MICROSCOPY | 3.3 | 77 |
| 7 | 5MGP|1|x | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 77 |
| 8 | 6SZS|1|x | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | ELECTRON MICROSCOPY | 3.06 | 77 |
| 9 | 7O19|1|B8 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.9 | 77 |
| 10 | 7O1C|1|B8 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.6 | 77 |
| 11 | 7O1A|1|B8 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.4 | 74 |
| 12 | 7Z20|1|v | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.29 | 77 |
| 13 | 6NUO|1|XV | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.2 | 76 |
| 14 | 6O3M|1|XV | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.97 | 77 |
| 15 | 6O3M|1|QV | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.97 | 77 |
| 16 | 6NUO|1|QV | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.2 | 76 |
| 17 | 7ZP8|1|v | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.2 | 76 |