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Equivalence class NR_3.5_06650.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16D9J|1|5+ 6D9J|1|8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
23J71|1|5+ 3J71|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian 60S ribosomal subunitElectron microscopy3.42014-06-18
33J72|1|5+ 3J72|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complexElectron microscopy3.42014-06-18
45LZS|1|5+ 5LZS|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
53J74|1|5+ 3J74|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2Electron microscopy3.52014-06-18
65LZV|1|5+ 5LZV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
76D90|1|5+ 6D90|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
85LZZ|1|5+ 5LZZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
93JAH|1|5+ 3JAH|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
101VWW|1|5+ 1VWW|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.Electron microscopy3.42014-06-18
111VWY|1|5+ 1VWY|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.Electron microscopy3.42014-06-18
121VX3|1|5+ 1VX3|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.Electron microscopy3.52014-06-18

Release history

Release3.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.43
Date2018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_06650.5NR_3.5_06650.43.25(10) 1VWW|1|5+1VWW|1|8, 1VWY|1|5+1VWY|1|8, 1VX3|1|5+1VX3|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 3J74|1|5+3J74|1|8, 3JAH|1|5+3JAH|1|8, 5LZS|1|5+5LZS|1|8, 5LZV|1|5+5LZV|1|8, 5LZZ|1|5+5LZZ|1|8(2) 6D90|1|5+6D90|1|8, 6D9J|1|5+6D9J|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_06650.5NR_3.5_06650.63.44(12) 1VWW|1|5+1VWW|1|8, 1VWY|1|5+1VWY|1|8, 1VX3|1|5+1VX3|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 3J74|1|5+3J74|1|8, 3JAH|1|5+3JAH|1|8, 5LZS|1|5+5LZS|1|8, 5LZV|1|5+5LZV|1|8, 5LZZ|1|5+5LZZ|1|8, 6D90|1|5+6D90|1|8, 6D9J|1|5+6D9J|1|8(0) (0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.

#SPDBTitleMethodResolutionLength
1
1VX3|1|5+1VX3|1|8		Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.53662
2
3J74|1|5+3J74|1|8		Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.53662
3
1VWY|1|5+1VWY|1|8		Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
4
3J72|1|5+3J72|1|8		Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.43662
5
3J71|1|5+3J71|1|8		Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.43662
6
1VWW|1|5+1VWW|1|8		Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
7
3JAH|1|5+3JAH|1|8		Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
8
5LZV|1|5+5LZV|1|8		Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
9
5LZS|1|5+5LZS|1|8		Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
10
5LZZ|1|5+5LZZ|1|8		Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
11
6D90|1|5+6D90|1|8		Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23594
12
6D9J|1|5+6D9J|1|8		Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23594

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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